rs8273640 SNP Detail

Summary

• ID
  rs8273640
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:75462988 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATTAAATA AGAATGAATT
  AAAACTCACT GATGATGCCA AGAAAAGAAA ATATACAAGT GTATGTTTTA CTGTCTACAC
  ATGGAGTGAA GAAAATGAGA GAAAAGTAAA AACCTGACCC CCCCCCCCAA AGGGTCACTT
  CTTGTAATGA ACATGGTACA ATTTCTCCAA GATTCTGCAC TTAATTTTCA CTTAATGAAA
  K
  CATGAATATC TGTAAAGTAA GTTCTGTGAA AGTTTCACCC ATAGTTTTTG AAAATGGTAA
  GAAAATAGAA ATGAAAAGGA CTATTCTCTT AATGGCAACA CTGAGCTATT CCTAAATATT
  ATCTATCCTT TAAAAATGGC GTGTGGAAAG TGAGTGTTAT CATTCAGTAG ACCCCAGAAA
  AAGGGGTAAA GATCTAAGCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZW/Lac
ss12770900	Serpini1_JC8103_1	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZW/Lac
rs8273640					SNP	G	G	G	G	G	G	G	T	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:75462988 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13269	CpG island 13269	643 bp proximal
Pdcd10	programmed cell death 10	Intron
Rr578348	regulatory region 578348	165 bp proximal
Rr578349	regulatory region 578349	1120 bp proximal
Rr578350	regulatory region 578350	1156 bp proximal
Rr578351	regulatory region 578351	1877 bp proximal
Serpini1	serine (or cysteine) peptidase inhibitor, clade I, member 1	1812 bp upstream
Tssr29563	transcription start site region 29563	1829 bp upstream
Tssr29564	transcription start site region 29564	1849 bp upstream
Tssr29565	transcription start site region 29565	1895 bp upstream
Tssr29566	transcription start site region 29566	1913 bp upstream
Tssr33586	transcription start site region 33586	1108 bp downstream
Tssr33587	transcription start site region 33587	1222 bp downstream
Tssr33588	transcription start site region 33588	1243 bp downstream