rs8269677 SNP Detail

Summary

• ID
  rs8269677
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164675091 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCGGGGAA TTCGGAACTG
  CTCGATGCGC AGATAGGGTT CAACCAGTAG GGCTTGGGGA CCACTGGGGA CCGCTGCCTC
  CGCTTCTGGT TGACCTTCCC GGGGCACACG GTTGTGGTGG CGTGTGATAG CGAAGACCCA
  ACTGTGGCCA AGGCTGACCA AGTCAGGCAG TGAAAACTCG GGTACAGCGG CCAGACTGGC
  S
  GGATCCAGAG CGGTCAGGCC AAGACGTAAG TGCCCGCACC AGCCCAGCTC TTTTTCCTCA
  ATTTCCACTA GAAATACCTG GCCGGGGGCC AGGGGCTCAC GACTGAAGCA CACACCGTGG
  GCGAAACTCT CCACGCGTGT GGCTCGCGTT CCTGAGGGGT CCATGCGGAT GTTGGCTCCA
  TGCACTTGGT GGAAGCGGGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	SPRET/EiJ	WSB/EiJ
ss12766828	Ppgb_JC7729_3	ROCHEBIO	RPAMM	f	SNP	C			G	G	G		G								G		G	G		C
ss37516091	NES08883265	PERLEGEN	MM_PANEL2	f	SNP		C			G	G	G		G	G		C	G	G	C		G			G		G
ss45268863	mCV23739727	ABI	CRAMUS_MOUSE	f	SNP			C		G						G		G
ss148232108	ENSMUSSNP6720386	ENSEMBL	ENSEMBL_Sanger	f	SNP			C		G								G
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	SPRET/EiJ	WSB/EiJ
rs8269677					SNP	C	C	C	G	G	G	G	G	G	G	G	C	G	G	C	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37516091	NES08883265	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164675091 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ctsa	cathepsin A			mRNA-UTR
				Noncoding-Transcript-Variant
Neurl2	neuralized E3 ubiquitin protein ligase 2			Coding-Synonymous
Rr367364	regulatory region 367364			591 bp upstream
Rr397479	regulatory region 397479			1668 bp downstream
Rr569727	regulatory region 569727			1782 bp distal
Rr569728	regulatory region 569728			922 bp distal
Rr569729	regulatory region 569729			260 bp distal
Rr569730	regulatory region 569730			275 bp proximal
Tssr21656	transcription start site region 21656			293 bp downstream
Tssr21657	transcription start site region 21657			236 bp downstream
Tssr21658	transcription start site region 21658			201 bp downstream
Tssr21659	transcription start site region 21659			595 bp upstream
Tssr21660	transcription start site region 21660			610 bp upstream
Tssr21661	transcription start site region 21661			670 bp upstream
Tssr21662	transcription start site region 21662			844 bp upstream
Tssr21663	transcription start site region 21663			905 bp upstream
Tssr21664	transcription start site region 21664			936 bp upstream
Tssr21665	transcription start site region 21665			1692 bp upstream
Tssr27546	transcription start site region 27546			267 bp downstream