rs8266412 SNP Detail

Summary

• ID
  rs8266412
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:46400858 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                               AAGCCANGA GGTTCCACTG
  AGAGGAAACA CAGCAATCAA TNAGTTTCTG TGNCNNGNTC TGCNTCTCAC CTGGTGTCTN
  CTGNGCAGAT CTGGTGGTCT ATGGGTNTAG GTGAGAGGAG GCANGCATTT ATGCTGAGCC
  TCCCTNCTCA GGTGAGGGNC AAGGACAGCC TNGCACCNCC CTTGGNAANA CTCCAGNCAA
  GTCATTTCTT GTAAAGACTG TGACAGAAAT CTTCCCGGTG TCCTGTGAGC TCTTNATNCA
  CAGGTCATTN TCCCTCATTG TGCAATGGGA GCACNGGAGA CAATTTTCTG TGCGGTGGCA
  ATCTTCTGGG GNGTAGTAGC CTGGGGTCAA CAGTGAGGGG AGAGAGGGTG CCAAGAGGAA
  GGCAGTGTGT GTCCTGGGAG GGGATAGGGG CTCCTANGNA AGCAGTCAGA ACTGTTCCTG
  CAGAGAANAC TCGACTTTNT AANCAATGCT CAGGCTGTCC CTGGTTTTGT tttgtttnnt
  K
  ttttgttttt tgtttgtttg tttgtttgtt tAGGACTGAN ACTTTAAACA TTTGCTTCTT
  TCTGTCTGTC TATCTCNCCC NCCCTCTTTC                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	DBA/2J	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12763306	Saa2_JC7060_30	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	A/HeJ	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	DBA/2J	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8266412					SNP	T	T	T	T	T	T	T	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:46400858 () rs orientation: reverse

Symbol	Name	Function Class
D7Mit28	DNA segment, Chr 7, Massachusetts Institute of Technology 28	88 bp distal
Gm74180	predicted gene, 74180	within coordinates
Rr380764	regulatory region 380764	1964 bp downstream
Saa2	serum amyloid A 2	399 bp upstream
Tssr66700	transcription start site region 66700	398 bp upstream
Tssr66701	transcription start site region 66701	919 bp upstream
Tssr66702	transcription start site region 66702	1982 bp upstream