rs8266406 SNP Detail

Summary

• ID
  rs8266406
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:46400940 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              TGTGACAGAA ATCTTCCCGG
  TGTCCTGTGA GCTCTTTATC CACAGGTCAT TTTCCCTCAT TGTGCAATGG GAGCACAGGA
  GACAATTTTC TGTGCGGTGG CAATCTTCTG GGGTGTAGTA GCCTGGGGTC AACAGTGAGG
  GGAGAGAGGG TGCCAAGAGG AAGGCAGTGT GTGTCCTGGG AGGGGATAGG GGCTCCTAGG
  W
  AAGCAGTCAG AACTGTTCCT GCAGAGAACA CTCGACTTTT TAATCAATGC TCAGGCTGTC
  CCTGGTTTTG TTTTGTTTCA TTTTTTGTTT TTTGTTTGTT TGTTTGTTTG TTTAGGACTG
  ATACTTTAAA CATTTGCTTC TTTCTGTCTG TCTATCTCTC CCTCCCTCTT TCTGTCTCTG
  TGCTACCCTT TCAAGGGACC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12763300	Saa2_JC7060_24	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8266406					SNP	A	A	A	A	A	A	A	A	A	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:46400940 () rs orientation: reverse

Symbol	Name	Function Class
D7Mit28	DNA segment, Chr 7, Massachusetts Institute of Technology 28	170 bp distal
Gm74180	predicted gene, 74180	within coordinates
Saa2	serum amyloid A 2	317 bp upstream
Tssr66700	transcription start site region 66700	316 bp upstream
Tssr66701	transcription start site region 66701	837 bp upstream
Tssr66702	transcription start site region 66702	1900 bp upstream
Tssr66703	transcription start site region 66703	1923 bp upstream
Tssr66704	transcription start site region 66704	1978 bp upstream