rs8262679 SNP Detail

Summary

• ID
  rs8262679
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:117151512 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGGCCCTT TGTGAGATTT
  TTCTTTGGCC TCCTGTAGAA TGGAGCCAGA CCATCCTGGA TAATGTGAGA ACATGCCTAG
  ATTTACCCAC AAAACACAAG TCTGAGAATT AATCATAAAC GGAAGTTTAA ATGAGGATTT
  GGACTTTGGT AATTGTCCCT GAGTCCTATA TATTTCAACA GTGGCTCTAT GGGCTCTGAT
  Y
  GAATATCAGT GATGAAAATA ATAATAATAA TAATAATAAC GAATAAGCCA GAATCTTGCC
  ATGAAGCCAC AGTGGGGATT CTGGGTTCCA ATCAGAAATG GAGACAAGAT AAAACTTGCA
  TACATTCTTA TGATCACAGA CGGCCCTGGT GGTTTTTGGT AACTATTTAC AAGGCATTTT
  TTTACATATA TTTTTGTGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12759343	L12029_JC345_4	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8262679					SNP	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117151512 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cxcl12	C-X-C motif chemokine ligand 12			Intron
				mRNA-UTR
Rr637288	regulatory region 637288			1883 bp distal
Rr637289	regulatory region 637289			227 bp distal
Rr637290	regulatory region 637290			479 bp distal
Rr637291	regulatory region 637291			428 bp distal
Rr637292	regulatory region 637292			1792 bp proximal
Tssr58395	transcription start site region 58395			1046 bp downstream
Tssr58396	transcription start site region 58396			1032 bp downstream
Tssr58397	transcription start site region 58397			997 bp downstream
Tssr58398	transcription start site region 58398			974 bp downstream
Tssr58399	transcription start site region 58399			945 bp downstream
Tssr58400	transcription start site region 58400			912 bp downstream
Tssr58401	transcription start site region 58401			878 bp downstream
Tssr58402	transcription start site region 58402			849 bp downstream
Tssr58403	transcription start site region 58403			831 bp downstream
Tssr58404	transcription start site region 58404			820 bp downstream
Tssr58405	transcription start site region 58405			764 bp downstream
Tssr58406	transcription start site region 58406			735 bp downstream
Tssr58407	transcription start site region 58407			713 bp downstream
Tssr58408	transcription start site region 58408			650 bp downstream
Tssr58409	transcription start site region 58409			622 bp downstream
Tssr58410	transcription start site region 58410			604 bp downstream
Tssr58411	transcription start site region 58411			573 bp downstream
Tssr58412	transcription start site region 58412			561 bp downstream
Tssr58413	transcription start site region 58413			537 bp downstream
Tssr58414	transcription start site region 58414			515 bp downstream
Tssr58415	transcription start site region 58415			497 bp downstream
Tssr58416	transcription start site region 58416			479 bp downstream
Tssr58417	transcription start site region 58417			425 bp downstream
Tssr58418	transcription start site region 58418			399 bp downstream
Tssr58419	transcription start site region 58419			379 bp downstream
Tssr58420	transcription start site region 58420			344 bp downstream
Tssr58421	transcription start site region 58421			320 bp downstream
Tssr58422	transcription start site region 58422			307 bp downstream
Tssr58423	transcription start site region 58423			286 bp downstream
Tssr58424	transcription start site region 58424			227 bp downstream
Tssr58425	transcription start site region 58425			188 bp downstream
Tssr58426	transcription start site region 58426			170 bp downstream
Tssr58427	transcription start site region 58427			136 bp downstream
Tssr58428	transcription start site region 58428			125 bp downstream
Tssr58429	transcription start site region 58429			47 bp downstream
Tssr58430	transcription start site region 58430			16 bp downstream
Tssr58431	transcription start site region 58431			71 bp upstream
Tssr58432	transcription start site region 58432			144 bp upstream
Tssr58433	transcription start site region 58433			180 bp upstream
Tssr58434	transcription start site region 58434			618 bp upstream
Tssr62617	transcription start site region 62617			975 bp upstream
Tssr62618	transcription start site region 62618			952 bp upstream
Tssr62619	transcription start site region 62619			916 bp upstream
Tssr62620	transcription start site region 62620			883 bp upstream
Tssr62621	transcription start site region 62621			799 bp upstream
Tssr62622	transcription start site region 62622			259 bp upstream
Tssr62623	transcription start site region 62623			239 bp upstream
Tssr62624	transcription start site region 62624			93 bp upstream
Tssr62625	transcription start site region 62625			8 bp downstream
Tssr62626	transcription start site region 62626			104 bp downstream
Tssr62627	transcription start site region 62627			135 bp downstream
Tssr62628	transcription start site region 62628			270 bp downstream
Tssr62629	transcription start site region 62629			450 bp downstream