rs8262671 SNP Detail

Summary

• ID
  rs8262671
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:117150036 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        AAATT CTGGAGAGTG CCAGAAGCAG
  Y
  CTAAGAACTT TTGACAGAGC ACCTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12759331	L12029_JC336_6	ROCHEBIO	RPAMM	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8262671					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117150036 () rs orientation: reverse

Symbol	Name	Function Class
Cxcl12	C-X-C motif chemokine ligand 12	Intron
Rr637288	regulatory region 637288	407 bp distal
Rr637289	regulatory region 637289	791 bp proximal
Rr637290	regulatory region 637290	976 bp proximal
Rr637291	regulatory region 637291	1027 bp proximal
Tssr58392	transcription start site region 58392	1588 bp downstream
Tssr58393	transcription start site region 58393	1569 bp downstream
Tssr58394	transcription start site region 58394	1529 bp downstream
Tssr58395	transcription start site region 58395	417 bp upstream
Tssr58396	transcription start site region 58396	433 bp upstream
Tssr58397	transcription start site region 58397	471 bp upstream
Tssr58398	transcription start site region 58398	497 bp upstream
Tssr58399	transcription start site region 58399	519 bp upstream
Tssr58400	transcription start site region 58400	547 bp upstream
Tssr58401	transcription start site region 58401	583 bp upstream
Tssr58402	transcription start site region 58402	614 bp upstream
Tssr58403	transcription start site region 58403	632 bp upstream
Tssr58404	transcription start site region 58404	651 bp upstream
Tssr58405	transcription start site region 58405	693 bp upstream
Tssr58406	transcription start site region 58406	723 bp upstream
Tssr58407	transcription start site region 58407	754 bp upstream
Tssr58408	transcription start site region 58408	821 bp upstream
Tssr58409	transcription start site region 58409	843 bp upstream
Tssr58410	transcription start site region 58410	865 bp upstream
Tssr58411	transcription start site region 58411	881 bp upstream
Tssr58412	transcription start site region 58412	908 bp upstream
Tssr58413	transcription start site region 58413	921 bp upstream
Tssr58414	transcription start site region 58414	954 bp upstream
Tssr58415	transcription start site region 58415	969 bp upstream
Tssr58416	transcription start site region 58416	984 bp upstream
Tssr58417	transcription start site region 58417	1038 bp upstream
Tssr58418	transcription start site region 58418	1071 bp upstream
Tssr58419	transcription start site region 58419	1090 bp upstream
Tssr58420	transcription start site region 58420	1117 bp upstream
Tssr58421	transcription start site region 58421	1136 bp upstream
Tssr58422	transcription start site region 58422	1162 bp upstream
Tssr58423	transcription start site region 58423	1170 bp upstream
Tssr58424	transcription start site region 58424	1232 bp upstream
Tssr58425	transcription start site region 58425	1277 bp upstream
Tssr58426	transcription start site region 58426	1299 bp upstream
Tssr58427	transcription start site region 58427	1326 bp upstream
Tssr58428	transcription start site region 58428	1341 bp upstream
Tssr58429	transcription start site region 58429	1406 bp upstream
Tssr58430	transcription start site region 58430	1451 bp upstream
Tssr58431	transcription start site region 58431	1547 bp upstream
Tssr58432	transcription start site region 58432	1620 bp upstream
Tssr58433	transcription start site region 58433	1656 bp upstream
Tssr62617	transcription start site region 62617	481 bp downstream
Tssr62618	transcription start site region 62618	503 bp downstream
Tssr62619	transcription start site region 62619	539 bp downstream
Tssr62620	transcription start site region 62620	582 bp downstream
Tssr62621	transcription start site region 62621	648 bp downstream
Tssr62622	transcription start site region 62622	1200 bp downstream
Tssr62623	transcription start site region 62623	1218 bp downstream
Tssr62624	transcription start site region 62624	1333 bp downstream
Tssr62625	transcription start site region 62625	1484 bp downstream
Tssr62626	transcription start site region 62626	1580 bp downstream
Tssr62627	transcription start site region 62627	1611 bp downstream
Tssr62628	transcription start site region 62628	1746 bp downstream
Tssr62629	transcription start site region 62629	1926 bp downstream