rs8262670 SNP Detail

Summary

• ID
  rs8262670
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:117150098 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TGGAG GAAGAACCAC CCAGAAGGCG
  M
  GGATGACTGA TATCATGGTG GGGGG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	C57BL/6J	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12759330	L12029_JC336_5	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	C57BL/6J	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8262670					SNP	C	C	C	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117150098 () rs orientation: reverse

Symbol	Name	Function Class
Cxcl12	C-X-C motif chemokine ligand 12	Intron
Rr637288	regulatory region 637288	469 bp distal
Rr637289	regulatory region 637289	729 bp proximal
Rr637290	regulatory region 637290	914 bp proximal
Rr637291	regulatory region 637291	965 bp proximal
Tssr58392	transcription start site region 58392	1650 bp downstream
Tssr58393	transcription start site region 58393	1631 bp downstream
Tssr58394	transcription start site region 58394	1591 bp downstream
Tssr58395	transcription start site region 58395	355 bp upstream
Tssr58396	transcription start site region 58396	371 bp upstream
Tssr58397	transcription start site region 58397	409 bp upstream
Tssr58398	transcription start site region 58398	435 bp upstream
Tssr58399	transcription start site region 58399	457 bp upstream
Tssr58400	transcription start site region 58400	485 bp upstream
Tssr58401	transcription start site region 58401	521 bp upstream
Tssr58402	transcription start site region 58402	552 bp upstream
Tssr58403	transcription start site region 58403	570 bp upstream
Tssr58404	transcription start site region 58404	589 bp upstream
Tssr58405	transcription start site region 58405	631 bp upstream
Tssr58406	transcription start site region 58406	661 bp upstream
Tssr58407	transcription start site region 58407	692 bp upstream
Tssr58408	transcription start site region 58408	759 bp upstream
Tssr58409	transcription start site region 58409	781 bp upstream
Tssr58410	transcription start site region 58410	803 bp upstream
Tssr58411	transcription start site region 58411	819 bp upstream
Tssr58412	transcription start site region 58412	846 bp upstream
Tssr58413	transcription start site region 58413	859 bp upstream
Tssr58414	transcription start site region 58414	892 bp upstream
Tssr58415	transcription start site region 58415	907 bp upstream
Tssr58416	transcription start site region 58416	922 bp upstream
Tssr58417	transcription start site region 58417	976 bp upstream
Tssr58418	transcription start site region 58418	1009 bp upstream
Tssr58419	transcription start site region 58419	1028 bp upstream
Tssr58420	transcription start site region 58420	1055 bp upstream
Tssr58421	transcription start site region 58421	1074 bp upstream
Tssr58422	transcription start site region 58422	1100 bp upstream
Tssr58423	transcription start site region 58423	1108 bp upstream
Tssr58424	transcription start site region 58424	1170 bp upstream
Tssr58425	transcription start site region 58425	1215 bp upstream
Tssr58426	transcription start site region 58426	1237 bp upstream
Tssr58427	transcription start site region 58427	1264 bp upstream
Tssr58428	transcription start site region 58428	1279 bp upstream
Tssr58429	transcription start site region 58429	1344 bp upstream
Tssr58430	transcription start site region 58430	1389 bp upstream
Tssr58431	transcription start site region 58431	1485 bp upstream
Tssr58432	transcription start site region 58432	1558 bp upstream
Tssr58433	transcription start site region 58433	1594 bp upstream
Tssr62617	transcription start site region 62617	419 bp downstream
Tssr62618	transcription start site region 62618	441 bp downstream
Tssr62619	transcription start site region 62619	477 bp downstream
Tssr62620	transcription start site region 62620	520 bp downstream
Tssr62621	transcription start site region 62621	586 bp downstream
Tssr62622	transcription start site region 62622	1138 bp downstream
Tssr62623	transcription start site region 62623	1156 bp downstream
Tssr62624	transcription start site region 62624	1271 bp downstream
Tssr62625	transcription start site region 62625	1422 bp downstream
Tssr62626	transcription start site region 62626	1518 bp downstream
Tssr62627	transcription start site region 62627	1549 bp downstream
Tssr62628	transcription start site region 62628	1684 bp downstream
Tssr62629	transcription start site region 62629	1864 bp downstream