rs8262669 SNP Detail

Summary

• ID
  rs8262669
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:117150232 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CTCCC AGGGGACACA GAGAAGAGAC
  Y
  ACAGTGGAGG CATTTGAGCT TCTGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	BALB/cJ	C57BL/6J	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12759329	L12029_JC336_4	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	BALB/cJ	C57BL/6J	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8262669					SNP	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117150232 () rs orientation: reverse

Symbol	Name	Function Class
Cxcl12	C-X-C motif chemokine ligand 12	Intron
Rr637288	regulatory region 637288	603 bp distal
Rr637289	regulatory region 637289	595 bp proximal
Rr637290	regulatory region 637290	780 bp proximal
Rr637291	regulatory region 637291	831 bp proximal
Tssr58392	transcription start site region 58392	1784 bp downstream
Tssr58393	transcription start site region 58393	1765 bp downstream
Tssr58394	transcription start site region 58394	1725 bp downstream
Tssr58395	transcription start site region 58395	221 bp upstream
Tssr58396	transcription start site region 58396	237 bp upstream
Tssr58397	transcription start site region 58397	275 bp upstream
Tssr58398	transcription start site region 58398	301 bp upstream
Tssr58399	transcription start site region 58399	323 bp upstream
Tssr58400	transcription start site region 58400	351 bp upstream
Tssr58401	transcription start site region 58401	387 bp upstream
Tssr58402	transcription start site region 58402	418 bp upstream
Tssr58403	transcription start site region 58403	436 bp upstream
Tssr58404	transcription start site region 58404	455 bp upstream
Tssr58405	transcription start site region 58405	497 bp upstream
Tssr58406	transcription start site region 58406	527 bp upstream
Tssr58407	transcription start site region 58407	558 bp upstream
Tssr58408	transcription start site region 58408	625 bp upstream
Tssr58409	transcription start site region 58409	647 bp upstream
Tssr58410	transcription start site region 58410	669 bp upstream
Tssr58411	transcription start site region 58411	685 bp upstream
Tssr58412	transcription start site region 58412	712 bp upstream
Tssr58413	transcription start site region 58413	725 bp upstream
Tssr58414	transcription start site region 58414	758 bp upstream
Tssr58415	transcription start site region 58415	773 bp upstream
Tssr58416	transcription start site region 58416	788 bp upstream
Tssr58417	transcription start site region 58417	842 bp upstream
Tssr58418	transcription start site region 58418	875 bp upstream
Tssr58419	transcription start site region 58419	894 bp upstream
Tssr58420	transcription start site region 58420	921 bp upstream
Tssr58421	transcription start site region 58421	940 bp upstream
Tssr58422	transcription start site region 58422	966 bp upstream
Tssr58423	transcription start site region 58423	974 bp upstream
Tssr58424	transcription start site region 58424	1036 bp upstream
Tssr58425	transcription start site region 58425	1081 bp upstream
Tssr58426	transcription start site region 58426	1103 bp upstream
Tssr58427	transcription start site region 58427	1130 bp upstream
Tssr58428	transcription start site region 58428	1145 bp upstream
Tssr58429	transcription start site region 58429	1210 bp upstream
Tssr58430	transcription start site region 58430	1255 bp upstream
Tssr58431	transcription start site region 58431	1351 bp upstream
Tssr58432	transcription start site region 58432	1424 bp upstream
Tssr58433	transcription start site region 58433	1460 bp upstream
Tssr58434	transcription start site region 58434	1898 bp upstream
Tssr62617	transcription start site region 62617	285 bp downstream
Tssr62618	transcription start site region 62618	307 bp downstream
Tssr62619	transcription start site region 62619	343 bp downstream
Tssr62620	transcription start site region 62620	386 bp downstream
Tssr62621	transcription start site region 62621	452 bp downstream
Tssr62622	transcription start site region 62622	1004 bp downstream
Tssr62623	transcription start site region 62623	1022 bp downstream
Tssr62624	transcription start site region 62624	1137 bp downstream
Tssr62625	transcription start site region 62625	1288 bp downstream
Tssr62626	transcription start site region 62626	1384 bp downstream
Tssr62627	transcription start site region 62627	1415 bp downstream
Tssr62628	transcription start site region 62628	1550 bp downstream
Tssr62629	transcription start site region 62629	1730 bp downstream