rs8262668 SNP Detail

Summary

• ID
  rs8262668
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:117150270 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GGACC ACCACCGCAG AGTTAGGGAC
  R
  TGCTAAGGAT GTCTCCCAGG GGACA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	BALB/cJ	C57BL/6J	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12759328	L12029_JC336_3	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	BALB/cJ	C57BL/6J	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8262668					SNP	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117150270 () rs orientation: reverse

Symbol	Name	Function Class
Cxcl12	C-X-C motif chemokine ligand 12	Intron
Rr637288	regulatory region 637288	641 bp distal
Rr637289	regulatory region 637289	557 bp proximal
Rr637290	regulatory region 637290	742 bp proximal
Rr637291	regulatory region 637291	793 bp proximal
Tssr58392	transcription start site region 58392	1822 bp downstream
Tssr58393	transcription start site region 58393	1803 bp downstream
Tssr58394	transcription start site region 58394	1763 bp downstream
Tssr58395	transcription start site region 58395	183 bp upstream
Tssr58396	transcription start site region 58396	199 bp upstream
Tssr58397	transcription start site region 58397	237 bp upstream
Tssr58398	transcription start site region 58398	263 bp upstream
Tssr58399	transcription start site region 58399	285 bp upstream
Tssr58400	transcription start site region 58400	313 bp upstream
Tssr58401	transcription start site region 58401	349 bp upstream
Tssr58402	transcription start site region 58402	380 bp upstream
Tssr58403	transcription start site region 58403	398 bp upstream
Tssr58404	transcription start site region 58404	417 bp upstream
Tssr58405	transcription start site region 58405	459 bp upstream
Tssr58406	transcription start site region 58406	489 bp upstream
Tssr58407	transcription start site region 58407	520 bp upstream
Tssr58408	transcription start site region 58408	587 bp upstream
Tssr58409	transcription start site region 58409	609 bp upstream
Tssr58410	transcription start site region 58410	631 bp upstream
Tssr58411	transcription start site region 58411	647 bp upstream
Tssr58412	transcription start site region 58412	674 bp upstream
Tssr58413	transcription start site region 58413	687 bp upstream
Tssr58414	transcription start site region 58414	720 bp upstream
Tssr58415	transcription start site region 58415	735 bp upstream
Tssr58416	transcription start site region 58416	750 bp upstream
Tssr58417	transcription start site region 58417	804 bp upstream
Tssr58418	transcription start site region 58418	837 bp upstream
Tssr58419	transcription start site region 58419	856 bp upstream
Tssr58420	transcription start site region 58420	883 bp upstream
Tssr58421	transcription start site region 58421	902 bp upstream
Tssr58422	transcription start site region 58422	928 bp upstream
Tssr58423	transcription start site region 58423	936 bp upstream
Tssr58424	transcription start site region 58424	998 bp upstream
Tssr58425	transcription start site region 58425	1043 bp upstream
Tssr58426	transcription start site region 58426	1065 bp upstream
Tssr58427	transcription start site region 58427	1092 bp upstream
Tssr58428	transcription start site region 58428	1107 bp upstream
Tssr58429	transcription start site region 58429	1172 bp upstream
Tssr58430	transcription start site region 58430	1217 bp upstream
Tssr58431	transcription start site region 58431	1313 bp upstream
Tssr58432	transcription start site region 58432	1386 bp upstream
Tssr58433	transcription start site region 58433	1422 bp upstream
Tssr58434	transcription start site region 58434	1860 bp upstream
Tssr62617	transcription start site region 62617	247 bp downstream
Tssr62618	transcription start site region 62618	269 bp downstream
Tssr62619	transcription start site region 62619	305 bp downstream
Tssr62620	transcription start site region 62620	348 bp downstream
Tssr62621	transcription start site region 62621	414 bp downstream
Tssr62622	transcription start site region 62622	966 bp downstream
Tssr62623	transcription start site region 62623	984 bp downstream
Tssr62624	transcription start site region 62624	1099 bp downstream
Tssr62625	transcription start site region 62625	1250 bp downstream
Tssr62626	transcription start site region 62626	1346 bp downstream
Tssr62627	transcription start site region 62627	1377 bp downstream
Tssr62628	transcription start site region 62628	1512 bp downstream
Tssr62629	transcription start site region 62629	1692 bp downstream