rs8262667 SNP Detail

Summary

• ID
  rs8262667
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:117150331 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GGGCC CAGCTGCTGC TCCCGGAAGC
  Y
  TCAGTTTTGG AAGACATAGC ACTTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	BALB/cJ	C57BL/6J	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12759327	L12029_JC336_2	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	BALB/cJ	C57BL/6J	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8262667					SNP	T	T	T	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117150331 () rs orientation: reverse

Symbol	Name	Function Class
Cxcl12	C-X-C motif chemokine ligand 12	Intron
Rr637288	regulatory region 637288	702 bp distal
Rr637289	regulatory region 637289	496 bp proximal
Rr637290	regulatory region 637290	681 bp proximal
Rr637291	regulatory region 637291	732 bp proximal
Tssr58392	transcription start site region 58392	1883 bp downstream
Tssr58393	transcription start site region 58393	1864 bp downstream
Tssr58394	transcription start site region 58394	1824 bp downstream
Tssr58395	transcription start site region 58395	122 bp upstream
Tssr58396	transcription start site region 58396	138 bp upstream
Tssr58397	transcription start site region 58397	176 bp upstream
Tssr58398	transcription start site region 58398	202 bp upstream
Tssr58399	transcription start site region 58399	224 bp upstream
Tssr58400	transcription start site region 58400	252 bp upstream
Tssr58401	transcription start site region 58401	288 bp upstream
Tssr58402	transcription start site region 58402	319 bp upstream
Tssr58403	transcription start site region 58403	337 bp upstream
Tssr58404	transcription start site region 58404	356 bp upstream
Tssr58405	transcription start site region 58405	398 bp upstream
Tssr58406	transcription start site region 58406	428 bp upstream
Tssr58407	transcription start site region 58407	459 bp upstream
Tssr58408	transcription start site region 58408	526 bp upstream
Tssr58409	transcription start site region 58409	548 bp upstream
Tssr58410	transcription start site region 58410	570 bp upstream
Tssr58411	transcription start site region 58411	586 bp upstream
Tssr58412	transcription start site region 58412	613 bp upstream
Tssr58413	transcription start site region 58413	626 bp upstream
Tssr58414	transcription start site region 58414	659 bp upstream
Tssr58415	transcription start site region 58415	674 bp upstream
Tssr58416	transcription start site region 58416	689 bp upstream
Tssr58417	transcription start site region 58417	743 bp upstream
Tssr58418	transcription start site region 58418	776 bp upstream
Tssr58419	transcription start site region 58419	795 bp upstream
Tssr58420	transcription start site region 58420	822 bp upstream
Tssr58421	transcription start site region 58421	841 bp upstream
Tssr58422	transcription start site region 58422	867 bp upstream
Tssr58423	transcription start site region 58423	875 bp upstream
Tssr58424	transcription start site region 58424	937 bp upstream
Tssr58425	transcription start site region 58425	982 bp upstream
Tssr58426	transcription start site region 58426	1004 bp upstream
Tssr58427	transcription start site region 58427	1031 bp upstream
Tssr58428	transcription start site region 58428	1046 bp upstream
Tssr58429	transcription start site region 58429	1111 bp upstream
Tssr58430	transcription start site region 58430	1156 bp upstream
Tssr58431	transcription start site region 58431	1252 bp upstream
Tssr58432	transcription start site region 58432	1325 bp upstream
Tssr58433	transcription start site region 58433	1361 bp upstream
Tssr58434	transcription start site region 58434	1799 bp upstream
Tssr62617	transcription start site region 62617	186 bp downstream
Tssr62618	transcription start site region 62618	208 bp downstream
Tssr62619	transcription start site region 62619	244 bp downstream
Tssr62620	transcription start site region 62620	287 bp downstream
Tssr62621	transcription start site region 62621	353 bp downstream
Tssr62622	transcription start site region 62622	905 bp downstream
Tssr62623	transcription start site region 62623	923 bp downstream
Tssr62624	transcription start site region 62624	1038 bp downstream
Tssr62625	transcription start site region 62625	1189 bp downstream
Tssr62626	transcription start site region 62626	1285 bp downstream
Tssr62627	transcription start site region 62627	1316 bp downstream
Tssr62628	transcription start site region 62628	1451 bp downstream
Tssr62629	transcription start site region 62629	1631 bp downstream