rs8262666 SNP Detail

Summary

• ID
  rs8262666
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:117150359 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        ACACA CCCAGCTAAA GGTCCTCACT
  K
  CAGGGCCCAG CTGCTGCTCC CGGAA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	BALB/cJ	C57BL/6J	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12759326	L12029_JC336_1	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	BALB/cJ	C57BL/6J	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8262666					SNP	G	G	G	G	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117150359 () rs orientation: reverse

Symbol	Name	Function Class
Cxcl12	C-X-C motif chemokine ligand 12	Intron
Rr637288	regulatory region 637288	730 bp distal
Rr637289	regulatory region 637289	468 bp proximal
Rr637290	regulatory region 637290	653 bp proximal
Rr637291	regulatory region 637291	704 bp proximal
Tssr58392	transcription start site region 58392	1911 bp downstream
Tssr58393	transcription start site region 58393	1892 bp downstream
Tssr58394	transcription start site region 58394	1852 bp downstream
Tssr58395	transcription start site region 58395	94 bp upstream
Tssr58396	transcription start site region 58396	110 bp upstream
Tssr58397	transcription start site region 58397	148 bp upstream
Tssr58398	transcription start site region 58398	174 bp upstream
Tssr58399	transcription start site region 58399	196 bp upstream
Tssr58400	transcription start site region 58400	224 bp upstream
Tssr58401	transcription start site region 58401	260 bp upstream
Tssr58402	transcription start site region 58402	291 bp upstream
Tssr58403	transcription start site region 58403	309 bp upstream
Tssr58404	transcription start site region 58404	328 bp upstream
Tssr58405	transcription start site region 58405	370 bp upstream
Tssr58406	transcription start site region 58406	400 bp upstream
Tssr58407	transcription start site region 58407	431 bp upstream
Tssr58408	transcription start site region 58408	498 bp upstream
Tssr58409	transcription start site region 58409	520 bp upstream
Tssr58410	transcription start site region 58410	542 bp upstream
Tssr58411	transcription start site region 58411	558 bp upstream
Tssr58412	transcription start site region 58412	585 bp upstream
Tssr58413	transcription start site region 58413	598 bp upstream
Tssr58414	transcription start site region 58414	631 bp upstream
Tssr58415	transcription start site region 58415	646 bp upstream
Tssr58416	transcription start site region 58416	661 bp upstream
Tssr58417	transcription start site region 58417	715 bp upstream
Tssr58418	transcription start site region 58418	748 bp upstream
Tssr58419	transcription start site region 58419	767 bp upstream
Tssr58420	transcription start site region 58420	794 bp upstream
Tssr58421	transcription start site region 58421	813 bp upstream
Tssr58422	transcription start site region 58422	839 bp upstream
Tssr58423	transcription start site region 58423	847 bp upstream
Tssr58424	transcription start site region 58424	909 bp upstream
Tssr58425	transcription start site region 58425	954 bp upstream
Tssr58426	transcription start site region 58426	976 bp upstream
Tssr58427	transcription start site region 58427	1003 bp upstream
Tssr58428	transcription start site region 58428	1018 bp upstream
Tssr58429	transcription start site region 58429	1083 bp upstream
Tssr58430	transcription start site region 58430	1128 bp upstream
Tssr58431	transcription start site region 58431	1224 bp upstream
Tssr58432	transcription start site region 58432	1297 bp upstream
Tssr58433	transcription start site region 58433	1333 bp upstream
Tssr58434	transcription start site region 58434	1771 bp upstream
Tssr62617	transcription start site region 62617	158 bp downstream
Tssr62618	transcription start site region 62618	180 bp downstream
Tssr62619	transcription start site region 62619	216 bp downstream
Tssr62620	transcription start site region 62620	259 bp downstream
Tssr62621	transcription start site region 62621	325 bp downstream
Tssr62622	transcription start site region 62622	877 bp downstream
Tssr62623	transcription start site region 62623	895 bp downstream
Tssr62624	transcription start site region 62624	1010 bp downstream
Tssr62625	transcription start site region 62625	1161 bp downstream
Tssr62626	transcription start site region 62626	1257 bp downstream
Tssr62627	transcription start site region 62627	1288 bp downstream
Tssr62628	transcription start site region 62628	1423 bp downstream
Tssr62629	transcription start site region 62629	1603 bp downstream