rs8262665 SNP Detail

Summary

• ID
  rs8262665
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:117150338 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CACTG CAGGGCCCAG CTGCTGCTCC
  Y
  GGAAGCTTCA GTTTTGGAAG ACATA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss12759325	L12029_JC335_2	ROCHEBIO	RPAMM	f	SNP	C		C	C				C	T					C		C	C
ss60932511	NES16191114	PERLEGEN	MM_PANEL2	r	SNP		G		G	G	G	G	G	A	G	A	G	A		G			G	A	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs8262665					SNP	C	C	C	C	C	C	C	C	T	C	T	C	T	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60932511	NES16191114	PERLEGEN	MM_PANEL	r	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117150338 () rs orientation: reverse

Symbol	Name	Function Class
Cxcl12	C-X-C motif chemokine ligand 12	Intron
Rr637288	regulatory region 637288	709 bp distal
Rr637289	regulatory region 637289	489 bp proximal
Rr637290	regulatory region 637290	674 bp proximal
Rr637291	regulatory region 637291	725 bp proximal
Tssr58392	transcription start site region 58392	1890 bp downstream
Tssr58393	transcription start site region 58393	1871 bp downstream
Tssr58394	transcription start site region 58394	1831 bp downstream
Tssr58395	transcription start site region 58395	115 bp upstream
Tssr58396	transcription start site region 58396	131 bp upstream
Tssr58397	transcription start site region 58397	169 bp upstream
Tssr58398	transcription start site region 58398	195 bp upstream
Tssr58399	transcription start site region 58399	217 bp upstream
Tssr58400	transcription start site region 58400	245 bp upstream
Tssr58401	transcription start site region 58401	281 bp upstream
Tssr58402	transcription start site region 58402	312 bp upstream
Tssr58403	transcription start site region 58403	330 bp upstream
Tssr58404	transcription start site region 58404	349 bp upstream
Tssr58405	transcription start site region 58405	391 bp upstream
Tssr58406	transcription start site region 58406	421 bp upstream
Tssr58407	transcription start site region 58407	452 bp upstream
Tssr58408	transcription start site region 58408	519 bp upstream
Tssr58409	transcription start site region 58409	541 bp upstream
Tssr58410	transcription start site region 58410	563 bp upstream
Tssr58411	transcription start site region 58411	579 bp upstream
Tssr58412	transcription start site region 58412	606 bp upstream
Tssr58413	transcription start site region 58413	619 bp upstream
Tssr58414	transcription start site region 58414	652 bp upstream
Tssr58415	transcription start site region 58415	667 bp upstream
Tssr58416	transcription start site region 58416	682 bp upstream
Tssr58417	transcription start site region 58417	736 bp upstream
Tssr58418	transcription start site region 58418	769 bp upstream
Tssr58419	transcription start site region 58419	788 bp upstream
Tssr58420	transcription start site region 58420	815 bp upstream
Tssr58421	transcription start site region 58421	834 bp upstream
Tssr58422	transcription start site region 58422	860 bp upstream
Tssr58423	transcription start site region 58423	868 bp upstream
Tssr58424	transcription start site region 58424	930 bp upstream
Tssr58425	transcription start site region 58425	975 bp upstream
Tssr58426	transcription start site region 58426	997 bp upstream
Tssr58427	transcription start site region 58427	1024 bp upstream
Tssr58428	transcription start site region 58428	1039 bp upstream
Tssr58429	transcription start site region 58429	1104 bp upstream
Tssr58430	transcription start site region 58430	1149 bp upstream
Tssr58431	transcription start site region 58431	1245 bp upstream
Tssr58432	transcription start site region 58432	1318 bp upstream
Tssr58433	transcription start site region 58433	1354 bp upstream
Tssr58434	transcription start site region 58434	1792 bp upstream
Tssr62617	transcription start site region 62617	179 bp downstream
Tssr62618	transcription start site region 62618	201 bp downstream
Tssr62619	transcription start site region 62619	237 bp downstream
Tssr62620	transcription start site region 62620	280 bp downstream
Tssr62621	transcription start site region 62621	346 bp downstream
Tssr62622	transcription start site region 62622	898 bp downstream
Tssr62623	transcription start site region 62623	916 bp downstream
Tssr62624	transcription start site region 62624	1031 bp downstream
Tssr62625	transcription start site region 62625	1182 bp downstream
Tssr62626	transcription start site region 62626	1278 bp downstream
Tssr62627	transcription start site region 62627	1309 bp downstream
Tssr62628	transcription start site region 62628	1444 bp downstream
Tssr62629	transcription start site region 62629	1624 bp downstream