rs8262664 SNP Detail

Summary

• ID
  rs8262664
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:117150417 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        ACAAG GGGAGAGACG CTGTACAGCC
  R
  AGCGGGAGAA AGCGATCCTG TGGGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	C3H/HeJ	CAST/EiJ	NZB/BlNJ	NZW/Lac
ss12759324	L12029_JC335_1	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	C3H/HeJ	CAST/EiJ	NZB/BlNJ	NZW/Lac
rs8262664					SNP	A	A	A	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117150417 () rs orientation: reverse

Symbol	Name	Function Class
Cxcl12	C-X-C motif chemokine ligand 12	Intron
Rr637288	regulatory region 637288	788 bp distal
Rr637289	regulatory region 637289	410 bp proximal
Rr637290	regulatory region 637290	595 bp proximal
Rr637291	regulatory region 637291	646 bp proximal
Tssr58392	transcription start site region 58392	1969 bp downstream
Tssr58393	transcription start site region 58393	1950 bp downstream
Tssr58394	transcription start site region 58394	1910 bp downstream
Tssr58395	transcription start site region 58395	36 bp upstream
Tssr58396	transcription start site region 58396	52 bp upstream
Tssr58397	transcription start site region 58397	90 bp upstream
Tssr58398	transcription start site region 58398	116 bp upstream
Tssr58399	transcription start site region 58399	138 bp upstream
Tssr58400	transcription start site region 58400	166 bp upstream
Tssr58401	transcription start site region 58401	202 bp upstream
Tssr58402	transcription start site region 58402	233 bp upstream
Tssr58403	transcription start site region 58403	251 bp upstream
Tssr58404	transcription start site region 58404	270 bp upstream
Tssr58405	transcription start site region 58405	312 bp upstream
Tssr58406	transcription start site region 58406	342 bp upstream
Tssr58407	transcription start site region 58407	373 bp upstream
Tssr58408	transcription start site region 58408	440 bp upstream
Tssr58409	transcription start site region 58409	462 bp upstream
Tssr58410	transcription start site region 58410	484 bp upstream
Tssr58411	transcription start site region 58411	500 bp upstream
Tssr58412	transcription start site region 58412	527 bp upstream
Tssr58413	transcription start site region 58413	540 bp upstream
Tssr58414	transcription start site region 58414	573 bp upstream
Tssr58415	transcription start site region 58415	588 bp upstream
Tssr58416	transcription start site region 58416	603 bp upstream
Tssr58417	transcription start site region 58417	657 bp upstream
Tssr58418	transcription start site region 58418	690 bp upstream
Tssr58419	transcription start site region 58419	709 bp upstream
Tssr58420	transcription start site region 58420	736 bp upstream
Tssr58421	transcription start site region 58421	755 bp upstream
Tssr58422	transcription start site region 58422	781 bp upstream
Tssr58423	transcription start site region 58423	789 bp upstream
Tssr58424	transcription start site region 58424	851 bp upstream
Tssr58425	transcription start site region 58425	896 bp upstream
Tssr58426	transcription start site region 58426	918 bp upstream
Tssr58427	transcription start site region 58427	945 bp upstream
Tssr58428	transcription start site region 58428	960 bp upstream
Tssr58429	transcription start site region 58429	1025 bp upstream
Tssr58430	transcription start site region 58430	1070 bp upstream
Tssr58431	transcription start site region 58431	1166 bp upstream
Tssr58432	transcription start site region 58432	1239 bp upstream
Tssr58433	transcription start site region 58433	1275 bp upstream
Tssr58434	transcription start site region 58434	1713 bp upstream
Tssr62617	transcription start site region 62617	100 bp downstream
Tssr62618	transcription start site region 62618	122 bp downstream
Tssr62619	transcription start site region 62619	158 bp downstream
Tssr62620	transcription start site region 62620	201 bp downstream
Tssr62621	transcription start site region 62621	267 bp downstream
Tssr62622	transcription start site region 62622	819 bp downstream
Tssr62623	transcription start site region 62623	837 bp downstream
Tssr62624	transcription start site region 62624	952 bp downstream
Tssr62625	transcription start site region 62625	1103 bp downstream
Tssr62626	transcription start site region 62626	1199 bp downstream
Tssr62627	transcription start site region 62627	1230 bp downstream
Tssr62628	transcription start site region 62628	1365 bp downstream
Tssr62629	transcription start site region 62629	1545 bp downstream