rs8261488 SNP Detail

Summary

• ID
  rs8261488
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:167199754 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGTATAGG TGTTACATAC
  GTGTGCGACA TACAGTGCAC GCGTAGAGGT CAGGGGCTAA CTTGTGGGAG CCAGATCAAC
  ACATGGCCAT CAGGCTTTGT GACAAGCGTC GTTACCTGCT CATGTGACTG AGCTCATTAC
  TTAACCTTTT AAGCAACATA AACAATCTTC AATAGATTAA AAAAAAAAAG TCCATACCGT
  Y
  AATTATTAGC ATCAAGCGGT ACTTTGAACT AGAGCCGAGG ATGAATTTTT CCGTCCTCAT
  CACCATGACT TCATCACCGA TTCACAGACT GTGTCGCGGG GGTGGGGGTG GGGTGCGCTC
  ACAGCTTTGC TCGTAATGGG TAGAAATGGC ACCATTATTT CACTAAGACT CTCAGAAAGA
  GATGCAGGCA GGAGCTTTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12758070	Mgst3_1_AN4509_10	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8261488					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:167199754 () rs orientation: forward

Symbol	Name	Function Class
Gm71125	predicted gene, 71125	1976 bp upstream
Mgst3	microsomal glutathione S-transferase 3	mRNA-UTR
Rr396523	regulatory region 396523	1982 bp downstream
Rr422700	regulatory region 422700	1493 bp distal
Rr422701	regulatory region 422701	1749 bp distal
Rr422702	regulatory region 422702	1832 bp proximal
Rr422703	regulatory region 422703	1987 bp proximal
Tssr14852	transcription start site region 14852	232 bp downstream
Tssr14853	transcription start site region 14853	1336 bp downstream