rs8261483 SNP Detail

Summary

• ID
  rs8261483
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:167199636 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTCCAGCC GGTTTCCTCA
  TCTATAAAAT GAGCTGTTAG CAATTCTAGC ATCACAGTTA TCCCTAGTTT CATCTGTGTC
  TATTGCTTAA GAAAGAAGCT TTAAACAGTT AACGTTTATT TGTATAGGTG TTACATACGT
  GTGCGACATA CAGTGCACGC GTAGAGGTCA GGGGCTAACT TGTGGGAGCC AGATCAACAC
  W
  TGGCCATCAG GCTTTGTGAC AAGCGTCGTT ACCTGCTCAT GTGACTGAGC TCATTACTTA
  ACCTTTTAAG CAACATAAAC AATCTTCAAT AGATTAAAAA AAAAAAGTCC ATACCGTTAA
  TTATTAGCAT CAAGCGGTAC TTTGAACTAG AGCCGAGGAT GAATTTTTCC GTCCTCATCA
  CCATGACTTC ATCACCGATT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12758065	Mgst3_1_AN4509_5	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8261483					SNP	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:167199636 () rs orientation: forward

Symbol	Name	Function Class
Mgst3	microsomal glutathione S-transferase 3	mRNA-UTR
Rr396523	regulatory region 396523	1864 bp downstream
Rr422698	regulatory region 422698	1982 bp distal
Rr422699	regulatory region 422699	1925 bp distal
Rr422700	regulatory region 422700	1375 bp distal
Rr422701	regulatory region 422701	1631 bp distal
Rr422702	regulatory region 422702	1950 bp proximal
Tssr14852	transcription start site region 14852	350 bp downstream
Tssr14853	transcription start site region 14853	1454 bp downstream