rs8256572 SNP Detail

Summary

• ID
  rs8256572
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137525157 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAGG GCTCAAGATG ACAAAAGGCT
  K
  GAGATTGTAT CTGTGTGCCG AGGGA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	C57BL/6J	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J
ss12752740	X53659_318A_1	ROCHEBIO	RPAMM	f	SNP	G		T		T	G	G	T		T	T	T
ss45606656	mCV22547099	ABI	CRAMUS_MOUSE	f	SNP		G		T			G	T
ss147620317	ENSMUSSNP712851	ENSEMBL	ENSEMBL_Sanger	f	SNP				T				T
ss321367546	CHEV_4_137353761	CHEVERUD	SCREENING_POP	f	SNP									T				G
SNP Consensus Information
SNP					Consensus Type	129/Sv	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	C57BL/6J	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J
rs8256572					SNP	G	G	T	T	T	G	G	T	T	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137525157 () rs orientation: forward

Symbol	Name	Function Class
Alpl	alkaline phosphatase, liver/bone/kidney	1462 bp upstream
Cpgi15139	CpG island 15139	1144 bp distal
Rr602724	regulatory region 602724	1473 bp distal
Rr602725	regulatory region 602725	1517 bp distal
Rr602726	regulatory region 602726	972 bp distal
Rr602727	regulatory region 602727	1382 bp distal
Tssr1350	transcription start site region 1350	1550 bp upstream
Tssr44149	transcription start site region 44149	1521 bp upstream
Tssr44150	transcription start site region 44150	1485 bp upstream