rs8253204 SNP Detail

Summary

• ID
  rs8253204
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153649655 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              CTTCTCTCCA GTCACCCACG
  CTTCTTGAAG GGAACCCGGT GTCAGAACCC TGCTGTGGCA GAGGCGATCA CTTCCAAAAA
  ACTTTGACTG TAGTCCCACC CCAGGAAGGC ATCAGTGTGT GGTTCTGTAG CCACGGGCGT
  GAACAAGTGT TAGGATCCAA ACAGGTTGAT CCTGGGTGTG CACAGAACAC AGGCACAACA
  S
  GAAGGAAAGG GAAGTGGGCC GCTCCGCTCG CACCAACAGG GTTAGGACGC CTGTGGTTTT
  GTGATGTACA GGCACCCTTC CAAAAAACAA AAGGGAGACA AGCCTACCGA AGAATTTTCA
  TGAAGCTTGC TTTCTAAATG TTGTACCCTG CAGAGTTTTG TCTCCTAAGC TGTTTTAACC
  ACTAGTTTGT TATATTAGCG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12748947	U21488_AN703_1	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8253204					SNP	C	C	C	C	C	C	C	C	C	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153649655 () rs orientation: reverse

Symbol	Name	Function Class
Acadm	acyl-Coenzyme A dehydrogenase, medium chain	Intron
Cpgi13964	CpG island 13964	within coordinates
Rr587801	regulatory region 587801	within coordinates
Rr587802	regulatory region 587802	604 bp proximal
Tssr32439	transcription start site region 32439	833 bp upstream
Tssr36252	transcription start site region 36252	407 bp downstream
Tssr36253	transcription start site region 36253	443 bp downstream
Tssr36254	transcription start site region 36254	614 bp downstream