rs8249764 SNP Detail

Summary

• ID
  rs8249764
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:85599440 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTGTGCCT CGGACCCGGG
  ACTGCGCCCC ACAGTCTGCA GGGTGAAGCC AGGCGCCAAG AAACCGCTGT CCGGCTGCAA
  CTTCAGATGT AGCTGCTGGC CAAAGGCGTC CAGACGAAGG CGTGTGGTGG TGGAATCGTG
  GCCCGGGGCG CGCTCCAGCG AGGGCAGGAC CAGCTCCTCA TCTTCCTCCG TGGGGCGCCC
  K
  TGTGCGCCCC GCGCACATAG CAGCATTGTT ATGGAAGCGA GGAGCAGCAA CAGCATGTGT
  GCGGACAGAG AGCCCCGAGA TCTCGCTGCC CGCTGGACGT CCCCCATGTC GGAGCAGGGC
  TTCTGCTTGC GTGACCCCAA AGGGACTTTT GGCTGCATGG CACCGCACCC TGCACCGCAG
  AGAACTCTTG GTCTGGATAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12745127	AB001735_AN1676_4	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8249764					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:85599440 () rs orientation: forward

Symbol	Name	Function Class
Adamts1	ADAM metallopeptidase with thrombospondin type 1 motif 1	Coding-NonSynonymous
Cpgi8390	CpG island 8390	within coordinates
D16Mit152	DNA segment, Chr 16, Massachusetts Institute of Technology 152	1282 bp proximal
Rr392078	regulatory region 392078	882 bp downstream
Rr518655	regulatory region 518655	1194 bp distal
Rr518656	regulatory region 518656	551 bp proximal
Tssr141910	transcription start site region 141910	1268 bp upstream
Tssr141911	transcription start site region 141911	554 bp downstream
Tssr141912	transcription start site region 141912	1403 bp downstream