rs8247998 SNP Detail

Summary

• ID
  rs8247998
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:24236459 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGTTTTA AAAATTGGAT
  CAAAAGCCTT GGGAGATGCC ATCAACCTTA TAGTAAAAAT GGCAGGCCTC GATTTTGATT
  TTAAAATGAA TAAAGAGATT GTTGGTGCAT ATGATCTGTT CTTGATCCTT CCTGAGAGTG
  AAGTCTGTGT TGAGTCACTT CCCCTTTGAC CCTGTCTGCT TTGGATCCAC AGCTGGAGGC
  K
  GGGACTCTAA CTGTGATTCT ATACATCTAT CCCAAGGCAA GTCTGTCCCA CAGATCCAGT
  AACTGCTTCG TGAGATTTAC CATCATCACA TCCTCTTAGC AGCCTCAAGA GAGGTCCCTG
  GAGTCCTGTT AGCAAGACTA TTGAGTCCCT TGAGTTTGAA GCTCACCAGA GATATAGACA
  CCAGTCACAA AGGCACAAAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12743292	L32838_JC4372_1	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8247998					SNP	T	T	T	T	T	T	T	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:24236459 () rs orientation: forward

Symbol	Name	Function Class
Il1rn	interleukin 1 receptor antagonist	Intron
Rr552851	regulatory region 552851	1432 bp distal
Rr552852	regulatory region 552852	1127 bp distal
Rr552853	regulatory region 552853	1217 bp proximal
Tssr16578	transcription start site region 16578	1175 bp downstream
Tssr16579	transcription start site region 16579	1152 bp downstream
Tssr16580	transcription start site region 16580	1100 bp downstream
Tssr16581	transcription start site region 16581	1025 bp downstream
Tssr16582	transcription start site region 16582	1007 bp upstream
Tssr16583	transcription start site region 16583	1256 bp upstream