rs8246926 SNP Detail

Summary

• ID
  rs8246926
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:8733005 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGCTCCTTT GGATGGTGGC
  CACCAGCTCT GGGAGCAGAG CCTGAGAGAC TCAAGGGATG CTGCTTTTTG GGTTCTAGGA
  GCCTCTAAAG CTAATCCTGC AAGGCTTCTC AGCTTTGGGA CGAAATGCAT GCCCCTATGC
  ATGTCATTTC CGGGGAAGTA GAGCGCTTGT TTTCTGGGTT AGCTTGAGGG AGGAGTAGCT
  R
  TCCCCCGAGA CATTCATTAT GTTGGGATTT TTGCTGTTGT TTTGTTTTGT TTTTGTCCTC
  CCTTCCCCCT AGTGTTGGCG GCCAGATCCT CTTAGCAGGC GACAGGGTGG CGGCCTGGGT
  GTTTGCTTCT GAGGCTGTGC GATCATCTGT GCGAGGATGC ACGTTTCTGG CCCGCATCGC
  GCGCGCGCGG ACACACACAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	NZB/BlNJ	SPRET/EiJ
ss12742156	AJ277507_AN520_1	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	NZB/BlNJ	SPRET/EiJ
rs8246926					SNP	A	A	A	A	A	A	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:8733005 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12962	CpG island 12962	within coordinates
Gm64520	predicted gene, 64520	within coordinates
Hey1	hairy/enhancer-of-split related with YRPW motif 1	907 bp upstream
Rr573306	regulatory region 573306	1404 bp distal
Rr573307	regulatory region 573307	780 bp distal
Rr573308	regulatory region 573308	199 bp distal
Tssr32551	transcription start site region 32551	1102 bp upstream
Tssr32552	transcription start site region 32552	967 bp upstream
Tssr32553	transcription start site region 32553	933 bp upstream
Tssr32554	transcription start site region 32554	899 bp upstream
Tssr32555	transcription start site region 32555	889 bp upstream
Tssr32556	transcription start site region 32556	649 bp upstream