rs8246925 SNP Detail

Summary

• ID
  rs8246925
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:8733534 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTTCAGCG TTCACAGAAG
  TAGACAACCT GGAGAAAGCC CAGTCTTTAT CCTGCCCCAC TCTTGGAGCC TGCAATCCCG
  TCTATGAAGC AAAACTTCAT AACCGTTGAG AAGAATAAAA GAAACTCAAC ACCTTTGCAA
  GCAATTCTGT TTCTAGACAT GATGGGTTCC ATAAATGCAG ACTAAACCGA GTTCCCAGGT
  Y
  CAGTTCTCCA TCCACACACT TTAGACCACA TCCTGGGTCC TTTTAAAGTT CTCATTGCAC
  TTCACCCTAC TGTTCAGAGC CTCAGCCCTC ACAGCTCCTC TGAAAAGGTG AGGTCCCTCC
  ATCTTGGCTT TGTTTTTTCC TAGTGCACAT ATCCCACCAC ACAGCTTAGG AGTGGTCAAG
  CCAAGGCTCA CTGCCTGCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12742155	AJ277507_AN519_5	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8246925					SNP	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:8733534 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12962	CpG island 12962	236 bp distal
Gm64520	predicted gene, 64520	within coordinates
Hey1	hairy/enhancer-of-split related with YRPW motif 1	1436 bp upstream
Rr573306	regulatory region 573306	1933 bp distal
Rr573307	regulatory region 573307	1309 bp distal
Rr573308	regulatory region 573308	728 bp distal
Tssr32551	transcription start site region 32551	1631 bp upstream
Tssr32552	transcription start site region 32552	1496 bp upstream
Tssr32553	transcription start site region 32553	1462 bp upstream
Tssr32554	transcription start site region 32554	1428 bp upstream
Tssr32555	transcription start site region 32555	1418 bp upstream
Tssr32556	transcription start site region 32556	1178 bp upstream