rs8245887 SNP Detail

Summary

• ID
  rs8245887
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:117151729 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TATAT TCTGAAATAC ATTTGTCTTC
  Y
  AAAGAAACAT AAAAAGTGCA CAAAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZW/Lac	SPRET/EiJ
ss12741027	L12029_AN2230_1	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZW/Lac	SPRET/EiJ
rs8245887					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117151729 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cxcl12	C-X-C motif chemokine ligand 12			Intron
				mRNA-UTR
Rr637289	regulatory region 637289			444 bp distal
Rr637290	regulatory region 637290			696 bp distal
Rr637291	regulatory region 637291			645 bp distal
Rr637292	regulatory region 637292			1575 bp proximal
Tssr58395	transcription start site region 58395			1263 bp downstream
Tssr58396	transcription start site region 58396			1249 bp downstream
Tssr58397	transcription start site region 58397			1214 bp downstream
Tssr58398	transcription start site region 58398			1191 bp downstream
Tssr58399	transcription start site region 58399			1162 bp downstream
Tssr58400	transcription start site region 58400			1129 bp downstream
Tssr58401	transcription start site region 58401			1095 bp downstream
Tssr58402	transcription start site region 58402			1066 bp downstream
Tssr58403	transcription start site region 58403			1048 bp downstream
Tssr58404	transcription start site region 58404			1037 bp downstream
Tssr58405	transcription start site region 58405			981 bp downstream
Tssr58406	transcription start site region 58406			952 bp downstream
Tssr58407	transcription start site region 58407			930 bp downstream
Tssr58408	transcription start site region 58408			867 bp downstream
Tssr58409	transcription start site region 58409			839 bp downstream
Tssr58410	transcription start site region 58410			821 bp downstream
Tssr58411	transcription start site region 58411			790 bp downstream
Tssr58412	transcription start site region 58412			778 bp downstream
Tssr58413	transcription start site region 58413			754 bp downstream
Tssr58414	transcription start site region 58414			732 bp downstream
Tssr58415	transcription start site region 58415			714 bp downstream
Tssr58416	transcription start site region 58416			696 bp downstream
Tssr58417	transcription start site region 58417			642 bp downstream
Tssr58418	transcription start site region 58418			616 bp downstream
Tssr58419	transcription start site region 58419			596 bp downstream
Tssr58420	transcription start site region 58420			561 bp downstream
Tssr58421	transcription start site region 58421			537 bp downstream
Tssr58422	transcription start site region 58422			524 bp downstream
Tssr58423	transcription start site region 58423			503 bp downstream
Tssr58424	transcription start site region 58424			444 bp downstream
Tssr58425	transcription start site region 58425			405 bp downstream
Tssr58426	transcription start site region 58426			387 bp downstream
Tssr58427	transcription start site region 58427			353 bp downstream
Tssr58428	transcription start site region 58428			342 bp downstream
Tssr58429	transcription start site region 58429			264 bp downstream
Tssr58430	transcription start site region 58430			233 bp downstream
Tssr58431	transcription start site region 58431			134 bp downstream
Tssr58432	transcription start site region 58432			53 bp downstream
Tssr58433	transcription start site region 58433			28 bp downstream
Tssr58434	transcription start site region 58434			401 bp upstream
Tssr62617	transcription start site region 62617			1192 bp upstream
Tssr62618	transcription start site region 62618			1169 bp upstream
Tssr62619	transcription start site region 62619			1133 bp upstream
Tssr62620	transcription start site region 62620			1100 bp upstream
Tssr62621	transcription start site region 62621			1016 bp upstream
Tssr62622	transcription start site region 62622			476 bp upstream
Tssr62623	transcription start site region 62623			456 bp upstream
Tssr62624	transcription start site region 62624			310 bp upstream
Tssr62625	transcription start site region 62625			171 bp upstream
Tssr62626	transcription start site region 62626			106 bp upstream
Tssr62627	transcription start site region 62627			61 bp upstream
Tssr62628	transcription start site region 62628			53 bp downstream
Tssr62629	transcription start site region 62629			233 bp downstream