rs8245877 SNP Detail

Summary

• ID
  rs8245877
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:117150838 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGCCAGGA TGGCCGGCGG
  GACAGCACTG ACTGGGGTCA TGCTAAGGTT TGCCAGCATA AAGACACTCC GCCATAGCAT
  ATGGTACGAT ATTGCAGCTT ATATTCATCC CTGCCCTCGC CCGTGCACAA TGGAGCTTTT
  ATAACTGGGG TTTTTCTAAG GAATTGTATT ACCCTAACCA GTTAGCTTCA TCCCCATTCT
  Y
  CTCATCCTCA TCTTCATTTT AAAAAGCAGT GATTACTTCA AGGGCTGTAT TCAGTTTGCT
  TTGGAGCTTC TCTTTGCCCT GGGGCCTCTG GGCACAGTTA TAGACGGTGG CTTTGCAGGG
  AGCCCTAGAG AGAAACCTTC CACCAGAGCA GAGTCCGAGG AACGCTGCAG GGCTTGTCCT
  GCAGGGGGCG CTCCTCGACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	NZW/Lac	SPRET/EiJ
ss12741015	L12029_AN2228_4	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	NZW/Lac	SPRET/EiJ
rs8245877					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117150838 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cxcl12	C-X-C motif chemokine ligand 12			Intron
				mRNA-UTR
Rr637288	regulatory region 637288			1209 bp distal
Rr637289	regulatory region 637289			within coordinates
Rr637290	regulatory region 637290			174 bp proximal
Rr637291	regulatory region 637291			225 bp proximal
Tssr58395	transcription start site region 58395			372 bp downstream
Tssr58396	transcription start site region 58396			358 bp downstream
Tssr58397	transcription start site region 58397			323 bp downstream
Tssr58398	transcription start site region 58398			300 bp downstream
Tssr58399	transcription start site region 58399			271 bp downstream
Tssr58400	transcription start site region 58400			238 bp downstream
Tssr58401	transcription start site region 58401			204 bp downstream
Tssr58402	transcription start site region 58402			175 bp downstream
Tssr58403	transcription start site region 58403			157 bp downstream
Tssr58404	transcription start site region 58404			146 bp downstream
Tssr58405	transcription start site region 58405			90 bp downstream
Tssr58406	transcription start site region 58406			61 bp downstream
Tssr58407	transcription start site region 58407			39 bp downstream
Tssr58408	transcription start site region 58408			19 bp upstream
Tssr58409	transcription start site region 58409			41 bp upstream
Tssr58410	transcription start site region 58410			63 bp upstream
Tssr58411	transcription start site region 58411			79 bp upstream
Tssr58412	transcription start site region 58412			106 bp upstream
Tssr58413	transcription start site region 58413			119 bp upstream
Tssr58414	transcription start site region 58414			152 bp upstream
Tssr58415	transcription start site region 58415			167 bp upstream
Tssr58416	transcription start site region 58416			182 bp upstream
Tssr58417	transcription start site region 58417			236 bp upstream
Tssr58418	transcription start site region 58418			269 bp upstream
Tssr58419	transcription start site region 58419			288 bp upstream
Tssr58420	transcription start site region 58420			315 bp upstream
Tssr58421	transcription start site region 58421			334 bp upstream
Tssr58422	transcription start site region 58422			360 bp upstream
Tssr58423	transcription start site region 58423			368 bp upstream
Tssr58424	transcription start site region 58424			430 bp upstream
Tssr58425	transcription start site region 58425			475 bp upstream
Tssr58426	transcription start site region 58426			497 bp upstream
Tssr58427	transcription start site region 58427			524 bp upstream
Tssr58428	transcription start site region 58428			539 bp upstream
Tssr58429	transcription start site region 58429			604 bp upstream
Tssr58430	transcription start site region 58430			649 bp upstream
Tssr58431	transcription start site region 58431			745 bp upstream
Tssr58432	transcription start site region 58432			818 bp upstream
Tssr58433	transcription start site region 58433			854 bp upstream
Tssr58434	transcription start site region 58434			1292 bp upstream
Tssr62617	transcription start site region 62617			301 bp upstream
Tssr62618	transcription start site region 62618			278 bp upstream
Tssr62619	transcription start site region 62619			242 bp upstream
Tssr62620	transcription start site region 62620			209 bp upstream
Tssr62621	transcription start site region 62621			125 bp upstream
Tssr62622	transcription start site region 62622			398 bp downstream
Tssr62623	transcription start site region 62623			416 bp downstream
Tssr62624	transcription start site region 62624			531 bp downstream
Tssr62625	transcription start site region 62625			682 bp downstream
Tssr62626	transcription start site region 62626			778 bp downstream
Tssr62627	transcription start site region 62627			809 bp downstream
Tssr62628	transcription start site region 62628			944 bp downstream
Tssr62629	transcription start site region 62629			1124 bp downstream