rs8245876 SNP Detail

Summary

• ID
  rs8245876
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:117150748 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACGAT ATTGCAGCTT ATATTCATCC
  S
  TGCCCTCGCC CGTGCACAAT GGAGC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
ss12741014	L12029_AN2228_3	ROCHEBIO	RPAMM	f	SNP	C		C	C	C	C	C	C		C	C	G	C					C	C			G
ss60932509	NES16191116	PERLEGEN	MM_PANEL2	f	SNP		C		C	C		C		C	C		G	C	G	C	G	C			C	G		C
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
rs8245876					SNP	C	C	C	C	C	C	C	C	C	C	C	G	C	G	C	G	C	C	C	C	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60932509	NES16191116	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117150748 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cxcl12	C-X-C motif chemokine ligand 12			Intron
				mRNA-UTR
Rr637288	regulatory region 637288			1119 bp distal
Rr637289	regulatory region 637289			79 bp proximal
Rr637290	regulatory region 637290			264 bp proximal
Rr637291	regulatory region 637291			315 bp proximal
Tssr58395	transcription start site region 58395			282 bp downstream
Tssr58396	transcription start site region 58396			268 bp downstream
Tssr58397	transcription start site region 58397			233 bp downstream
Tssr58398	transcription start site region 58398			210 bp downstream
Tssr58399	transcription start site region 58399			181 bp downstream
Tssr58400	transcription start site region 58400			148 bp downstream
Tssr58401	transcription start site region 58401			114 bp downstream
Tssr58402	transcription start site region 58402			85 bp downstream
Tssr58403	transcription start site region 58403			67 bp downstream
Tssr58404	transcription start site region 58404			56 bp downstream
Tssr58405	transcription start site region 58405			within coordinates
Tssr58406	transcription start site region 58406			11 bp upstream
Tssr58407	transcription start site region 58407			42 bp upstream
Tssr58408	transcription start site region 58408			109 bp upstream
Tssr58409	transcription start site region 58409			131 bp upstream
Tssr58410	transcription start site region 58410			153 bp upstream
Tssr58411	transcription start site region 58411			169 bp upstream
Tssr58412	transcription start site region 58412			196 bp upstream
Tssr58413	transcription start site region 58413			209 bp upstream
Tssr58414	transcription start site region 58414			242 bp upstream
Tssr58415	transcription start site region 58415			257 bp upstream
Tssr58416	transcription start site region 58416			272 bp upstream
Tssr58417	transcription start site region 58417			326 bp upstream
Tssr58418	transcription start site region 58418			359 bp upstream
Tssr58419	transcription start site region 58419			378 bp upstream
Tssr58420	transcription start site region 58420			405 bp upstream
Tssr58421	transcription start site region 58421			424 bp upstream
Tssr58422	transcription start site region 58422			450 bp upstream
Tssr58423	transcription start site region 58423			458 bp upstream
Tssr58424	transcription start site region 58424			520 bp upstream
Tssr58425	transcription start site region 58425			565 bp upstream
Tssr58426	transcription start site region 58426			587 bp upstream
Tssr58427	transcription start site region 58427			614 bp upstream
Tssr58428	transcription start site region 58428			629 bp upstream
Tssr58429	transcription start site region 58429			694 bp upstream
Tssr58430	transcription start site region 58430			739 bp upstream
Tssr58431	transcription start site region 58431			835 bp upstream
Tssr58432	transcription start site region 58432			908 bp upstream
Tssr58433	transcription start site region 58433			944 bp upstream
Tssr58434	transcription start site region 58434			1382 bp upstream
Tssr62617	transcription start site region 62617			211 bp upstream
Tssr62618	transcription start site region 62618			188 bp upstream
Tssr62619	transcription start site region 62619			152 bp upstream
Tssr62620	transcription start site region 62620			119 bp upstream
Tssr62621	transcription start site region 62621			35 bp upstream
Tssr62622	transcription start site region 62622			488 bp downstream
Tssr62623	transcription start site region 62623			506 bp downstream
Tssr62624	transcription start site region 62624			621 bp downstream
Tssr62625	transcription start site region 62625			772 bp downstream
Tssr62626	transcription start site region 62626			868 bp downstream
Tssr62627	transcription start site region 62627			899 bp downstream
Tssr62628	transcription start site region 62628			1034 bp downstream
Tssr62629	transcription start site region 62629			1214 bp downstream