rs8244965 SNP Detail

Summary

• ID
  rs8244965
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:76867511 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACAGAGAT AATCACAATC
  TTCCTCCACA CCCCCTCTAC CTCCTTTACC TTGCCCTTCA GGCTGTAAGT AGTAAGTGGC
  CCGAGGGTGT AGATAACCAA CACAGCCAGA TATGGGAGCC TTCCAGCTCA CCCTAAAATT
  CCTCCAGCTA CCTGACCATC ATTTCCAAAG AATGTGACAT TTGTTCCTGT CCCTTTCAAC
  W
  CACAAGGACT TGCATTGCTG GACCAAGTCT GGCGTGGTTA ATGGCAAGGG TCCTGCAGAT
  TTCCCAGGCA GGAGGTGGGG GTAGCAGCCA GCCCCAAGAG CGCATGCATG CCTGCTGCCA
  ACTTGTAGAG AGGAGCCAGT GCGTTTTCCA AACGTGCCAT GAGGCCCGCC ATTGCTTTCC
  ACATCTCTGG CCAGAGAAGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss12739985	U57780_MC944_3	ROCHEBIO	RPAMM	f	SNP	T		T	T		T		T	T	A	T
ss52376018	NES15271663	PERLEGEN	MM_PANEL2	f	SNP		T	T	T	T		T	T		A	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs8244965					SNP	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52376018	NES15271663	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:76867511 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1753	CpG island 1753	789 bp proximal
Rr434375	regulatory region 434375	1612 bp distal
Rr434376	regulatory region 434376	517 bp proximal
Rr434377	regulatory region 434377	976 bp proximal
Rr434378	regulatory region 434378	1045 bp proximal
Rr434379	regulatory region 434379	1319 bp proximal
Rr434380	regulatory region 434380	1466 bp proximal
Rr434381	regulatory region 434381	1602 bp proximal
Slc19a1	solute carrier family 19 (folate transporter), member 1	592 bp upstream
Tssr94203	transcription start site region 94203	553 bp upstream
Tssr94204	transcription start site region 94204	581 bp upstream
Tssr94205	transcription start site region 94205	1034 bp upstream
Tssr94206	transcription start site region 94206	1563 bp upstream
Tssr94207	transcription start site region 94207	1583 bp upstream
Tssr94208	transcription start site region 94208	1613 bp upstream
Tssr94209	transcription start site region 94209	1627 bp upstream