rs8244964 SNP Detail

Summary

• ID
  rs8244964
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:76867258 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCCAGCAC CCACATGGCA
  GCTCACAATT GGTACAGGGA CCATTCTACC TCTGGTCCAC CTACAAGGTG CAGGTCCTTC
  AGGAATCCTA ACACAGGGAT AAACAGGACT GCAGGAAGCC CAGTGCCCTG GGATAGATGC
  GCTTATCAGT ATCTTCTTCT CTGTGACATA TAGGCCATGC AGACTGGATA CCACTACCTG
  Y
  TCCTGTGGGT AGGGTGTCCT CACTGAACCC CAAAGAGGCA CAGACCTGTC TGGCACAGAG
  ATAATCACAA TCTTCCTCCA CACCCCCTCT ACCTCCTTTA CCTTGCCCTT CAGGCTGTAA
  GTAGTAAGTG GCCCGAGGGT GTAGATAACC AACACAGCCA GATATGGGAG CCTTCCAGCT
  CACCCTAAAA TTCCTCCAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss12739984	U57780_MC944_2	ROCHEBIO	RPAMM	f	SNP	T	T	T	T		T		T	T	C	T
ss52376033	NES15271658	PERLEGEN	MM_PANEL2	f	SNP		T	T		T		T	T		C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs8244964					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52376033	NES15271658	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:76867258 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1753	CpG island 1753	1042 bp proximal
Gm3137	predicted gene, 3137	1849 bp upstream
Rr434375	regulatory region 434375	1359 bp distal
Rr434376	regulatory region 434376	770 bp proximal
Rr434377	regulatory region 434377	1229 bp proximal
Rr434378	regulatory region 434378	1298 bp proximal
Rr434379	regulatory region 434379	1572 bp proximal
Rr434380	regulatory region 434380	1719 bp proximal
Rr434381	regulatory region 434381	1855 bp proximal
Slc19a1	solute carrier family 19 (folate transporter), member 1	845 bp upstream
Tssr94203	transcription start site region 94203	806 bp upstream
Tssr94204	transcription start site region 94204	834 bp upstream
Tssr94205	transcription start site region 94205	1287 bp upstream
Tssr94206	transcription start site region 94206	1816 bp upstream
Tssr94207	transcription start site region 94207	1836 bp upstream
Tssr94208	transcription start site region 94208	1866 bp upstream
Tssr94209	transcription start site region 94209	1880 bp upstream
Tssr98215	transcription start site region 98215	1870 bp upstream