rs8244963 SNP Detail

Summary

• ID
  rs8244963
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:76867229 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTGCTCTT TCAGAGGACC
  CTGGTTCAAT TCCCAGCACC CACATGGCAG CTCACAATTG GTACAGGGAC CATTCTACCT
  CTGGTCCACC TACAAGGTGC AGGTCCTTCA GGAATCCTAA CACAGGGATA AACAGGACTG
  CAGGAAGCCC AGTGCCCTGG GATAGATGCG CTTATCAGTA TCTTCTTCTC TGTGACATAT
  R
  GGCCATGCAG ACTGGATACC ACTACCTGTT CCTGTGGGTA GGGTGTCCTC ACTGAACCCC
  AAAGAGGCAC AGACCTGTCT GGCACAGAGA TAATCACAAT CTTCCTCCAC ACCCCCTCTA
  CCTCCTTTAC CTTGCCCTTC AGGCTGTAAG TAGTAAGTGG CCCGAGGGTG TAGATAACCA
  ACACAGCCAG ATATGGGAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss12739983	U57780_MC944_1	ROCHEBIO	RPAMM	f	SNP	A		A	A	A		A		A	A	G	A
ss52376036	NES15271657	PERLEGEN	MM_PANEL2	f	SNP		A	A	A		A		A	A		G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs8244963					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52376036	NES15271657	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:76867229 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1753	CpG island 1753	1071 bp proximal
Gm3137	predicted gene, 3137	1820 bp upstream
Rr434375	regulatory region 434375	1330 bp distal
Rr434376	regulatory region 434376	799 bp proximal
Rr434377	regulatory region 434377	1258 bp proximal
Rr434378	regulatory region 434378	1327 bp proximal
Rr434379	regulatory region 434379	1601 bp proximal
Rr434380	regulatory region 434380	1748 bp proximal
Rr434381	regulatory region 434381	1884 bp proximal
Slc19a1	solute carrier family 19 (folate transporter), member 1	874 bp upstream
Tssr94203	transcription start site region 94203	835 bp upstream
Tssr94204	transcription start site region 94204	863 bp upstream
Tssr94205	transcription start site region 94205	1316 bp upstream
Tssr94206	transcription start site region 94206	1845 bp upstream
Tssr94207	transcription start site region 94207	1865 bp upstream
Tssr94208	transcription start site region 94208	1895 bp upstream
Tssr94209	transcription start site region 94209	1909 bp upstream
Tssr98215	transcription start site region 98215	1841 bp upstream