rs8244836 SNP Detail

Summary

• ID
  rs8244836
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:77002065 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        AGGGT TCGCTCTACT TACGTGCCTT
  Y
  TGTGCAGTTC TGTGGCTTGT CCCCG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ
ss12739856	U34606_MC891_2	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ
rs8244836					SNP	T	T	T	T	T	T	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:77002065 () rs orientation: reverse

Symbol	Name	Function Class
Col18a1	collagen, type XVIII, alpha 1	Intron
Cpgi1754	CpG island 1754	within coordinates
Gm67721	predicted gene, 67721	409 bp upstream
Rr384956	regulatory region 384956	1142 bp upstream
Rr434420	regulatory region 434420	307 bp proximal
Rr434421	regulatory region 434421	420 bp proximal
Tssr94211	transcription start site region 94211	388 bp upstream
Tssr98227	transcription start site region 98227	270 bp downstream
Tssr98228	transcription start site region 98228	314 bp downstream