rs8244835 SNP Detail

Summary

• ID
  rs8244835
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:77002324 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TGTGG GCTAGCGGCT CACCGAGGAG
  Y
  TGGGTGCAGC ATCCGGGCGC AGACG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	MRL/MpJ	NZW/LacJ	PWD/PhJ
ss12739855	U34606_MC891_1	ROCHEBIO	RPAMM	f	SNP	C		C	C	C		C	C	C	T	C			C
ss52373591	NES15269440	PERLEGEN	MM_PANEL2	r	SNP		G	G	G		G		G		A	G	G	G		G	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	MRL/MpJ	NZW/LacJ	PWD/PhJ
rs8244835					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52373591	NES15269440	PERLEGEN	MM_PANEL	r	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:77002324 () rs orientation: reverse

Symbol	Name	Function Class
Col18a1	collagen, type XVIII, alpha 1	mRNA-UTR
Cpgi1754	CpG island 1754	within coordinates
Gm67721	predicted gene, 67721	150 bp upstream
Rr384956	regulatory region 384956	883 bp upstream
Rr434420	regulatory region 434420	48 bp proximal
Rr434421	regulatory region 434421	161 bp proximal
Tssr94211	transcription start site region 94211	129 bp upstream
Tssr98227	transcription start site region 98227	11 bp downstream
Tssr98228	transcription start site region 98228	55 bp downstream