rs8244834 SNP Detail

Summary

• ID
  rs8244834
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:77003437 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTTCCCAA ATTCCCCAGC
  CCTCATCCTT GCCCATCTCC ACTGTCCTTC TTAGCCTGGC TCATTTCCCA GACCACAAAG
  AACTATCCAG GTTCAGCCAG GGTCCCCAGA CCTTCTCACA CCTCCACCCT GAGTCTGTAC
  CATCTCAAGT GACTCACACT TTTTCTGCAG ACCAGAGACC AAGTCCTTCA GTAACACCCC
  M
  TAGCTTTTCC TAAACCCCAG AGTTCTTCCT AATCCTCCCA GGCCCCTCTC CAGTCTCCCT
  TCCTCTTAGT CTCCATATAG CCTCCTGACC TGGGCTGGTT CTGCCCTCCC TCTGCCCACT
  GCTCCGCAGC TGCAGCCCGA GGCCTGCTTG GGATTCTCAT CTGCTCACAT CATCTGAATC
  CTCTCCAGGC TTCAAAGGCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss12739854	U34606_MC889_2	ROCHEBIO	RPAMM	f	SNP	A		A	A	A		A	A	A	C	A			A
ss52373573	NES15269447	PERLEGEN	MM_PANEL2	f	SNP		A	A			A				C		A	A		A	A	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs8244834					SNP	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52373573	NES15269447	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:77003437 () rs orientation: forward

Symbol	Name	Function Class
Col18a1	collagen, type XVIII, alpha 1	1086 bp upstream
Cpgi1754	CpG island 1754	895 bp distal
Gm67721	predicted gene, 67721	400 bp downstream
Rr384956	regulatory region 384956	within coordinates
Rr434420	regulatory region 434420	953 bp distal
Rr434421	regulatory region 434421	747 bp distal
Tssr94211	transcription start site region 94211	957 bp downstream
Tssr98227	transcription start site region 98227	1079 bp upstream
Tssr98228	transcription start site region 98228	1047 bp upstream