rs8244644 SNP Detail

Summary

• ID
  rs8244644
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:51355994 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                 GTTTGGC ATCTTTAGGG
  TCCACACAAA AGATTTTCTC TGCAGAAGTC CTTTTTTTCC ATCAACTTTT CAAATACTTA
  TCCGGAAGAC ATGTTTTAGG AATAAAGATA TTTTATTATT GAGATTTTTT TTTGTTTCAC
  TTATTTCAGG CATTACCATC TTTATGNCAA AACGACAGAC TCAGTTTTAA TGTGTTTTAG
  GTTTTCATTG TCTTCTATCA TAATTCTAAA TATTTTACAT ATACTATTAT TTTGTTTGTT
  AGGGTTCTTA TTGACTTCAT TAGCTTCATA TAATCATCAT ATCAAATTCA TACACATATA
  Y
  ACATATATAC ATACTCATGA ACAGAAAAAC TCATCACGTG TCAATTACTA ATTTGTGAGT
  ATATAAAAAC TTTCTTTGAC AAAATATTTA TCCTCTTAAT TATATACCTT CTTGCCATTT
  TTATGTTTTT GGAAACATTC TCCCCC                                     
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J
ss12739644	U05265_MC805_2	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J
rs8244644					SNP	C	C	C	C	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:51355994 () rs orientation: forward

Symbol	Name	Function Class
Gm49339	predicted gene, 49339	714 bp upstream
Lilrb4b	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	763 bp upstream
Rr431273	regulatory region 431273	575 bp proximal
Tssr93232	transcription start site region 93232	338 bp upstream
Tssr93233	transcription start site region 93233	915 bp upstream
Tssr93234	transcription start site region 93234	941 bp upstream
Tssr93235	transcription start site region 93235	1234 bp upstream
Tssr93236	transcription start site region 93236	1720 bp upstream
Tssr93237	transcription start site region 93237	1759 bp upstream
Tssr93238	transcription start site region 93238	1783 bp upstream
Tssr93239	transcription start site region 93239	1808 bp upstream
Tssr93240	transcription start site region 93240	1825 bp upstream
Tssr93241	transcription start site region 93241	1847 bp upstream
Tssr93242	transcription start site region 93242	1887 bp upstream
Tssr97553	transcription start site region 97553	536 bp downstream