rs8244643 SNP Detail

Summary

• ID
  rs8244643
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:51355840 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCCTCACA TCTGTCATAT
  TTTTCCTTCT TCTAAGTGTT TGGCATCTTT AGGGTCCACA CAAAAGATTT TCTCTGCAGA
  AGTCCTTTTT TTCCATCAAC TTTTCAAATA CTTATCCGGA AGACATGTTT TAGGAATAAA
  GATATTTTAT TATTGAGATT TTTTTTTGTT TCACTTATTT CAGGCATTAC CATCTTTATG
  Y
  CAAAACGACA GACTCAGTTT TAATGTGTTT TAGGTTTTCA TTGTCTTCTA TCATAATTCT
  AAATATTTTA CATATACTAT TATTTTGTTT GTTAGGGTTC TTATTGACTT CATTAGCTTC
  ATATAATCAT CATATCAAAT TCATACACAT ATACACATAT ATACATACTC ATGAACAGAA
  AAACTCATCA CGTGTCAATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	PWD/PhJ
ss12739643	U05265_MC805_1	ROCHEBIO	RPAMM	f	SNP	C		C	C	C		C		C	C	T	C				C
ss52289283	NES15305182	PERLEGEN	MM_PANEL2	f	SNP		C	C	C		C		C	C		T	C	C	C	T		C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	PWD/PhJ
rs8244643					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52289283	NES15305182	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:51355840 () rs orientation: forward

Symbol	Name	Function Class
Gm49339	predicted gene, 49339	868 bp upstream
Lilrb4b	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	917 bp upstream
Rr431273	regulatory region 431273	729 bp proximal
Tssr93232	transcription start site region 93232	492 bp upstream
Tssr93233	transcription start site region 93233	1069 bp upstream
Tssr93234	transcription start site region 93234	1095 bp upstream
Tssr93235	transcription start site region 93235	1388 bp upstream
Tssr93236	transcription start site region 93236	1874 bp upstream
Tssr93237	transcription start site region 93237	1913 bp upstream
Tssr93238	transcription start site region 93238	1937 bp upstream
Tssr93239	transcription start site region 93239	1962 bp upstream
Tssr93240	transcription start site region 93240	1979 bp upstream
Tssr97553	transcription start site region 97553	690 bp downstream