rs8242991 SNP Detail

Summary

• ID
  rs8242991
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:52169803 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                         TAAA ACCCCCAAAA NGNtgagaca
  taactctcat gccataaaat acaccatttt aaagtgtcta aatccgtggc ttttagtagc
  tgtatgtaag gtagcgcaat agtcaccatg atctcactta aaaacatatt cttctcccca
  ggagaaaccc cacagcctct agcaatcacc cctctgctcc antctcagct ncctgcaacc
  cctaagctgc cctgtctatc tnggtctgga tattACCATT TGAATCACAT TCATCTGGAG
  K
  NTTAAGGGCT CTTAAGCCTT TCAGATCATA GGCTCCAACA AGAGCCCACA GAAGAGGCCA
  AAGACTCATG TNGTCTCTGT CCTGTTTGGG ATCACACTGN CATGCAAA             
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12737781	TCF7_1_JC4980_4	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	G	T	T	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8242991					SNP	T	T	T	T	T	T	T	G	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:52169803 () rs orientation: forward

Symbol	Name	Function Class
A630014C17Rik	RIKEN cDNA A630014C17 gene	within coordinates
Rr386072	regulatory region 386072	944 bp downstream
Tcf7	transcription factor 7, T cell specific	Intron
Tssr101334	transcription start site region 101334	1025 bp upstream
Tssr107873	transcription start site region 107873	1812 bp upstream
Tssr107874	transcription start site region 107874	1605 bp upstream
Tssr107875	transcription start site region 107875	95 bp downstream
Tssr107876	transcription start site region 107876	1231 bp downstream
Tssr107877	transcription start site region 107877	1263 bp downstream