rs8241279 SNP Detail

Summary

• ID
  rs8241279
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:24236226 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TTCAG GCACTTTACA GTTCTCAGAG
  Y
  ATAGGTCTCA GAACATGGTT ACAGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12736024	L32838_JC4363_2	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8241279					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:24236226 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Il1rn	interleukin 1 receptor antagonist			Intron
				Noncoding-Transcript-Variant
Rr552851	regulatory region 552851			1199 bp distal
Rr552852	regulatory region 552852			894 bp distal
Rr552853	regulatory region 552853			1450 bp proximal
Tssr16578	transcription start site region 16578			942 bp downstream
Tssr16579	transcription start site region 16579			919 bp downstream
Tssr16580	transcription start site region 16580			867 bp downstream
Tssr16581	transcription start site region 16581			792 bp downstream
Tssr16582	transcription start site region 16582			1240 bp upstream
Tssr16583	transcription start site region 16583			1489 bp upstream