rs8240122 SNP Detail

Summary

• ID
  rs8240122
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:4091728 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                                  C
  TACTTCCCTC ACCATGGCCA GTCAGTCCTT GTACTCGAAA TTGCTTTGAG NCTGGGCCTN
  W
  ANNCTNTCCC CNAAATCCTT ACCCTGACTC CATACAGGGC GGTGTGAGGC CATGCGNATG
  CTGCTGGCTG ACCAGGGCCA GAGCTGGAAG GAGGAGGTGG TTACCATAGA TACCTGGATG
  CAAGGCTTGC TCAAGCCCAC TTGTGTGAGT GACACNCGTA GTGGAGGGGG CAGAGGTAGG
  GCCTTAGGAG GGCTGTGACT GGGAGGCAGC AGCATCACCA AGGTTCTTGT TCCTCCCTCC
  AGCTGTATGG GCAGCTNCCN AAGTTTGAGG ATGGAGACCT CACCCTTTAC CAATCTAATG
  CCATCTTGAG AC                                                    
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C57BL/6J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12734746	U15654_JC1574_3	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C57BL/6J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8240122					SNP	T	T	T	T	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:4091728 () rs orientation: reverse

Symbol	Name	Function Class
Gstp2	glutathione S-transferase, pi 2	Intron
Rr542599	regulatory region 542599	294 bp distal
Rr542600	regulatory region 542600	294 bp proximal
Rr542601	regulatory region 542601	525 bp proximal
Rr542602	regulatory region 542602	1403 bp proximal
Rr542603	regulatory region 542603	1682 bp proximal
Tssr157438	transcription start site region 157438	502 bp downstream
Tssr157439	transcription start site region 157439	515 bp downstream