rs8238257 SNP Detail

Summary

• ID
  rs8238257
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:117150885 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GAGAA GCTCCAAAGC AAACTGAATA
  Y
  AGCCCTTGAA GTAATCACTG CTTTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C57BL/6J	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12732610	L12029_AN2231_3	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C57BL/6J	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8238257					SNP	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117150885 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cxcl12	C-X-C motif chemokine ligand 12			Intron
				mRNA-UTR
Rr637288	regulatory region 637288			1256 bp distal
Rr637289	regulatory region 637289			within coordinates
Rr637290	regulatory region 637290			127 bp proximal
Rr637291	regulatory region 637291			178 bp proximal
Tssr58395	transcription start site region 58395			419 bp downstream
Tssr58396	transcription start site region 58396			405 bp downstream
Tssr58397	transcription start site region 58397			370 bp downstream
Tssr58398	transcription start site region 58398			347 bp downstream
Tssr58399	transcription start site region 58399			318 bp downstream
Tssr58400	transcription start site region 58400			285 bp downstream
Tssr58401	transcription start site region 58401			251 bp downstream
Tssr58402	transcription start site region 58402			222 bp downstream
Tssr58403	transcription start site region 58403			204 bp downstream
Tssr58404	transcription start site region 58404			193 bp downstream
Tssr58405	transcription start site region 58405			137 bp downstream
Tssr58406	transcription start site region 58406			108 bp downstream
Tssr58407	transcription start site region 58407			86 bp downstream
Tssr58408	transcription start site region 58408			23 bp downstream
Tssr58409	transcription start site region 58409			within coordinates
Tssr58410	transcription start site region 58410			16 bp upstream
Tssr58411	transcription start site region 58411			32 bp upstream
Tssr58412	transcription start site region 58412			59 bp upstream
Tssr58413	transcription start site region 58413			72 bp upstream
Tssr58414	transcription start site region 58414			105 bp upstream
Tssr58415	transcription start site region 58415			120 bp upstream
Tssr58416	transcription start site region 58416			135 bp upstream
Tssr58417	transcription start site region 58417			189 bp upstream
Tssr58418	transcription start site region 58418			222 bp upstream
Tssr58419	transcription start site region 58419			241 bp upstream
Tssr58420	transcription start site region 58420			268 bp upstream
Tssr58421	transcription start site region 58421			287 bp upstream
Tssr58422	transcription start site region 58422			313 bp upstream
Tssr58423	transcription start site region 58423			321 bp upstream
Tssr58424	transcription start site region 58424			383 bp upstream
Tssr58425	transcription start site region 58425			428 bp upstream
Tssr58426	transcription start site region 58426			450 bp upstream
Tssr58427	transcription start site region 58427			477 bp upstream
Tssr58428	transcription start site region 58428			492 bp upstream
Tssr58429	transcription start site region 58429			557 bp upstream
Tssr58430	transcription start site region 58430			602 bp upstream
Tssr58431	transcription start site region 58431			698 bp upstream
Tssr58432	transcription start site region 58432			771 bp upstream
Tssr58433	transcription start site region 58433			807 bp upstream
Tssr58434	transcription start site region 58434			1245 bp upstream
Tssr62617	transcription start site region 62617			348 bp upstream
Tssr62618	transcription start site region 62618			325 bp upstream
Tssr62619	transcription start site region 62619			289 bp upstream
Tssr62620	transcription start site region 62620			256 bp upstream
Tssr62621	transcription start site region 62621			172 bp upstream
Tssr62622	transcription start site region 62622			351 bp downstream
Tssr62623	transcription start site region 62623			369 bp downstream
Tssr62624	transcription start site region 62624			484 bp downstream
Tssr62625	transcription start site region 62625			635 bp downstream
Tssr62626	transcription start site region 62626			731 bp downstream
Tssr62627	transcription start site region 62627			762 bp downstream
Tssr62628	transcription start site region 62628			897 bp downstream
Tssr62629	transcription start site region 62629			1077 bp downstream