rs8237657 SNP Detail

Summary

• ID
  rs8237657
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137524029 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TTCCA AACWCGGTCT CTTATAACTC
  YCCCAATAAC GTGAAGSAAG AAAAACCAGR GGATAGTGTC TGCGGGTTAT AGAGCCTTGG
  CCAGTCCCCC GARGTCACCA GAGCAGGCCT GTGGGCCTAG ACAGTCTGGC TCCACTGCCT
  GGGAAGTGGT CTGCCCCGGG CAGGTCCTGG GGCTTCTGGC TGGGACAGAC AGAATGTCCT
  GAGTCCCTGT TTCTKCAGAT ATTAGGGAGG GAGGGCCCTG YCCAAGGGGT CTCCTTCTGC
  TTCCTACTGA CTTAGTTAAG GGCAAAARAG AAAGTGGATA GGAAAGGGGT AAGGGTGTGA
  S
  GCTCAGAGGT GCACATGGTG AMGGACAAGG ATGTGTAGGC AGAAAGACGC ACAGAAAAAA
  GGAGCCAGGT GGGTTCCAAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J
ss12731980	X53659_318C_15	ROCHEBIO	RPAMM	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J
rs8237657					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137524029 () rs orientation: reverse

Symbol	Name	Function Class
Alpl	alkaline phosphatase, liver/bone/kidney	334 bp upstream
Cpgi15139	CpG island 15139	16 bp distal
Rr602723	regulatory region 602723	1873 bp distal
Rr602724	regulatory region 602724	345 bp distal
Rr602725	regulatory region 602725	389 bp distal
Rr602726	regulatory region 602726	within coordinates
Rr602727	regulatory region 602727	254 bp distal
Tssr1350	transcription start site region 1350	422 bp upstream
Tssr44149	transcription start site region 44149	393 bp upstream
Tssr44150	transcription start site region 44150	357 bp upstream