rs8237656 SNP Detail

Summary

• ID
  rs8237656
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137524042 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                      TT CCAAACWCGG
  TCTCTTATAA CTCYCCCAAT AACGTGAAGS AAGAAAAACC AGRGGATAGT GTCTGCGGGT
  TATAGAGCCT TGGCCAGTCC CCCGARGTCA CCAGAGCAGG CCTGTGGGCC TAGACAGTCT
  GGCTCCACTG CCTGGGAAGT GGTCTGCCCC GGGCAGGTCC TGGGGCTTCT GGCTGGGACA
  GACAGAATGT CCTGAGTCCC TGTTTCTKCA GATATTAGGG AGGGAGGGCC CTGYCCAAGG
  GGTCTCCTTC TGCTTCCTAC TGACTTAGTT AAGGGCAAAA RAGAAAGTGG ATAGGAAAGG
  Y
  GTAAGGGTGT GAGGCTCAGA GGTGCACATG GTGAMGGACA AGGATGTGTA GGCAGAAAGA
  CGCACAGAAA AAAGGAGCCA GGTGGGTTCC AAG                             
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	BALB/cJ	C57BL/6J	DBA/2J
ss12731979	X53659_318C_14	ROCHEBIO	RPAMM	f	SNP	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	BALB/cJ	C57BL/6J	DBA/2J
rs8237656					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137524042 () rs orientation: reverse

Symbol	Name	Function Class
Alpl	alkaline phosphatase, liver/bone/kidney	347 bp upstream
Cpgi15139	CpG island 15139	29 bp distal
Rr602723	regulatory region 602723	1886 bp distal
Rr602724	regulatory region 602724	358 bp distal
Rr602725	regulatory region 602725	402 bp distal
Rr602726	regulatory region 602726	within coordinates
Rr602727	regulatory region 602727	267 bp distal
Tssr1350	transcription start site region 1350	435 bp upstream
Tssr44149	transcription start site region 44149	406 bp upstream
Tssr44150	transcription start site region 44150	370 bp upstream