rs8237655 SNP Detail

Summary

• ID
  rs8237655
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137524081 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                               TTC CAAACWCGGT CTCTTATAAC TCYCCCAATA
  ACGTGAAGSA AGAAAAACCA GRGGATAGTG TCTGCGGGTT ATAGAGCCTT GGCCAGTCCC
  CCGARGTCAC CAGAGCAGGC CTGTGGGCCT AGACAGTCTG GCTCCACTGC CTGGGAAGTG
  GTCTGCCCCG GGCAGGTCCT GGGGCTTCTG GCTGGGACAG ACAGAATGTC CTGAGTCCCT
  GTTTCTKCAG ATATTAGGGA GGGAGGGCCC TGYCCAAGGG GTCTCCTTCT GCTTCCTACT
  Y
  ACTTAGTTAA GGGCAAAARA GAAAGTGGAT AGGAAAGGGG TAAGGGTGTG AGGCTCAGAG
  GTGCACATGG TGAMGGACAA GGATGTGTAG GCAGAAAGAC GCACAGAAAA AAGGAGCCAG
  GTGGGTTCCA AG                                                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cJ	C57BL/6J	DBA/2J
ss12731978	X53659_318C_13	ROCHEBIO	RPAMM	f	SNP	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cJ	C57BL/6J	DBA/2J
rs8237655					SNP	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137524081 () rs orientation: reverse

Symbol	Name	Function Class
Alpl	alkaline phosphatase, liver/bone/kidney	386 bp upstream
Cpgi15139	CpG island 15139	68 bp distal
Rr602723	regulatory region 602723	1925 bp distal
Rr602724	regulatory region 602724	397 bp distal
Rr602725	regulatory region 602725	441 bp distal
Rr602726	regulatory region 602726	within coordinates
Rr602727	regulatory region 602727	306 bp distal
Tssr1350	transcription start site region 1350	474 bp upstream
Tssr44149	transcription start site region 44149	445 bp upstream
Tssr44150	transcription start site region 44150	409 bp upstream