rs8237654 SNP Detail

Summary

• ID
  rs8237654
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137524195 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                         TTCCAAACW CGGTCTCTTA TAACTCYCCC AATAACGTGA
  AGSAAGAAAA ACCAGRGGAT AGTGTCTGCG GGTTATAGAG CCTTGGCCAG TCCCCCGARG
  TCACCAGAGC AGGCCTGTGG GCCTAGACAG TCTGGCTCCA CTGCCTGGGA AGTGGTCTGC
  M
  CCGGGCAGGT CCTGGGGCTT CTGGCTGGGA CAGACAGAAT GTCCTGAGTC CCTGTTTCTK
  CAGATATTAG GGAGGGAGGG CCCTGYCCAA GGGGTCTCCT TCTGCTTCCT ACTGACTTAG
  TTAAGGGCAA AARAGAAAGT GGATAGGAAA GGGGTAAGGG TGTGAGGCTC AGAGGTGCAC
  ATGGTGAMGG ACAAGGATGT GTAGGCAGAA AGACGCACAG AAAAAAGGAG CCAGGTGGGT
  TCCAAG                                                           
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cJ	C57BL/6J	DBA/2J
ss12731977	X53659_318C_12	ROCHEBIO	RPAMM	f	SNP	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cJ	C57BL/6J	DBA/2J
rs8237654					SNP	A	C	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137524195 () rs orientation: reverse

Symbol	Name	Function Class
Alpl	alkaline phosphatase, liver/bone/kidney	500 bp upstream
Cpgi15139	CpG island 15139	182 bp distal
Rr602724	regulatory region 602724	511 bp distal
Rr602725	regulatory region 602725	555 bp distal
Rr602726	regulatory region 602726	10 bp distal
Rr602727	regulatory region 602727	420 bp distal
Tssr1350	transcription start site region 1350	588 bp upstream
Tssr44149	transcription start site region 44149	559 bp upstream
Tssr44150	transcription start site region 44150	523 bp upstream