rs8237653 SNP Detail

Summary

• ID
  rs8237653
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137524221 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                     TTC CAAACWCGGT
  CTCTTATAAC TCYCCCAATA ACGTGAAGSA AGAAAAACCA GRGGATAGTG TCTGCGGGTT
  ATAGAGCCTT GGCCAGTCCC CCGARGTCAC CAGAGCAGGC CTGTGGGCCT AGACAGTCTG
  R
  CTCCACTGCC TGGGAAGTGG TCTGCCCCGG GCAGGTCCTG GGGCTTCTGG CTGGGACAGA
  CAGAATGTCC TGAGTCCCTG TTTCTKCAGA TATTAGGGAG GGAGGGCCCT GYCCAAGGGG
  TCTCCTTCTG CTTCCTACTG ACTTAGTTAA GGGCAAAARA GAAAGTGGAT AGGAAAGGGG
  TAAGGGTGTG AGGCTCAGAG GTGCACATGG TGAMGGACAA GGATGTGTAG GCAGAAAGAC
  GCACAGAAAA AAGGAGCCAG GTGGGTTCCA AG                              
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cJ	C57BL/6J	DBA/2J
ss12731976	X53659_318C_11	ROCHEBIO	RPAMM	f	SNP	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cJ	C57BL/6J	DBA/2J
rs8237653					SNP	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137524221 () rs orientation: reverse

Symbol	Name	Function Class
Alpl	alkaline phosphatase, liver/bone/kidney	526 bp upstream
Cpgi15139	CpG island 15139	208 bp distal
Rr602724	regulatory region 602724	537 bp distal
Rr602725	regulatory region 602725	581 bp distal
Rr602726	regulatory region 602726	36 bp distal
Rr602727	regulatory region 602727	446 bp distal
Tssr1350	transcription start site region 1350	614 bp upstream
Tssr44149	transcription start site region 44149	585 bp upstream
Tssr44150	transcription start site region 44150	549 bp upstream