rs8237652 SNP Detail

Summary

• ID
  rs8237652
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137524264 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                   TTCCAAACWC GGTCTCTTAT AACTCYCCCA
  ATAACGTGAA GSAAGAAAAA CCAGRGGATA GTGTCTGCGG GTTATAGAGC CTTGGCCAGT
  Y
  CCCCGARGTC ACCAGAGCAG GCCTGTGGGC CTAGACAGTC TGGCTCCACT GCCTGGGAAG
  TGGTCTGCCC CGGGCAGGTC CTGGGGCTTC TGGCTGGGAC AGACAGAATG TCCTGAGTCC
  CTGTTTCTKC AGATATTAGG GAGGGAGGGC CCTGYCCAAG GGGTCTCCTT CTGCTTCCTA
  CTGACTTAGT TAAGGGCAAA ARAGAAAGTG GATAGGAAAG GGGTAAGGGT GTGAGGCTCA
  GAGGTGCACA TGGTGAMGGA CAAGGATGTG TAGGCAGAAA GACGCACAGA AAAAAGGAGC
  CAGGTGGGTT CCAAG                                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cJ	C57BL/6J	DBA/2J
ss12731975	X53659_318C_10	ROCHEBIO	RPAMM	f	SNP	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cJ	C57BL/6J	DBA/2J
rs8237652					SNP	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137524264 () rs orientation: reverse

Symbol	Name	Function Class
Alpl	alkaline phosphatase, liver/bone/kidney	569 bp upstream
Cpgi15139	CpG island 15139	251 bp distal
Rr602724	regulatory region 602724	580 bp distal
Rr602725	regulatory region 602725	624 bp distal
Rr602726	regulatory region 602726	79 bp distal
Rr602727	regulatory region 602727	489 bp distal
Tssr1350	transcription start site region 1350	657 bp upstream
Tssr44149	transcription start site region 44149	628 bp upstream
Tssr44150	transcription start site region 44150	592 bp upstream