rs8236553 SNP Detail

Summary

• ID
  rs8236553
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:117151579 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        ATTGG AACCCAGAAT CCCCACTGTG
  K
  CTTCATGGCA AGATTCTGGC TTATT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12741028	L12029_AN2230_2	ROCHEBIO	RPAMM	f	SNP	G		G	G	G	G	G	G	G	G	G	G		G	T
ss12759344	L12029_JC345_5	ROCHEBIO	RPAMM	r	SNP	C	C	C			C	C	C	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8236553					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117151579 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cxcl12	C-X-C motif chemokine ligand 12			Intron
				mRNA-UTR
Rr637288	regulatory region 637288			1950 bp distal
Rr637289	regulatory region 637289			294 bp distal
Rr637290	regulatory region 637290			546 bp distal
Rr637291	regulatory region 637291			495 bp distal
Rr637292	regulatory region 637292			1725 bp proximal
Tssr58395	transcription start site region 58395			1113 bp downstream
Tssr58396	transcription start site region 58396			1099 bp downstream
Tssr58397	transcription start site region 58397			1064 bp downstream
Tssr58398	transcription start site region 58398			1041 bp downstream
Tssr58399	transcription start site region 58399			1012 bp downstream
Tssr58400	transcription start site region 58400			979 bp downstream
Tssr58401	transcription start site region 58401			945 bp downstream
Tssr58402	transcription start site region 58402			916 bp downstream
Tssr58403	transcription start site region 58403			898 bp downstream
Tssr58404	transcription start site region 58404			887 bp downstream
Tssr58405	transcription start site region 58405			831 bp downstream
Tssr58406	transcription start site region 58406			802 bp downstream
Tssr58407	transcription start site region 58407			780 bp downstream
Tssr58408	transcription start site region 58408			717 bp downstream
Tssr58409	transcription start site region 58409			689 bp downstream
Tssr58410	transcription start site region 58410			671 bp downstream
Tssr58411	transcription start site region 58411			640 bp downstream
Tssr58412	transcription start site region 58412			628 bp downstream
Tssr58413	transcription start site region 58413			604 bp downstream
Tssr58414	transcription start site region 58414			582 bp downstream
Tssr58415	transcription start site region 58415			564 bp downstream
Tssr58416	transcription start site region 58416			546 bp downstream
Tssr58417	transcription start site region 58417			492 bp downstream
Tssr58418	transcription start site region 58418			466 bp downstream
Tssr58419	transcription start site region 58419			446 bp downstream
Tssr58420	transcription start site region 58420			411 bp downstream
Tssr58421	transcription start site region 58421			387 bp downstream
Tssr58422	transcription start site region 58422			374 bp downstream
Tssr58423	transcription start site region 58423			353 bp downstream
Tssr58424	transcription start site region 58424			294 bp downstream
Tssr58425	transcription start site region 58425			255 bp downstream
Tssr58426	transcription start site region 58426			237 bp downstream
Tssr58427	transcription start site region 58427			203 bp downstream
Tssr58428	transcription start site region 58428			192 bp downstream
Tssr58429	transcription start site region 58429			114 bp downstream
Tssr58430	transcription start site region 58430			83 bp downstream
Tssr58431	transcription start site region 58431			4 bp upstream
Tssr58432	transcription start site region 58432			77 bp upstream
Tssr58433	transcription start site region 58433			113 bp upstream
Tssr58434	transcription start site region 58434			551 bp upstream
Tssr62617	transcription start site region 62617			1042 bp upstream
Tssr62618	transcription start site region 62618			1019 bp upstream
Tssr62619	transcription start site region 62619			983 bp upstream
Tssr62620	transcription start site region 62620			950 bp upstream
Tssr62621	transcription start site region 62621			866 bp upstream
Tssr62622	transcription start site region 62622			326 bp upstream
Tssr62623	transcription start site region 62623			306 bp upstream
Tssr62624	transcription start site region 62624			160 bp upstream
Tssr62625	transcription start site region 62625			21 bp upstream
Tssr62626	transcription start site region 62626			37 bp downstream
Tssr62627	transcription start site region 62627			68 bp downstream
Tssr62628	transcription start site region 62628			203 bp downstream
Tssr62629	transcription start site region 62629			383 bp downstream