rs8236552 SNP Detail

Summary

• ID
  rs8236552
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:117150688 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGACCCGAA ATTAAAGTGG
  ATCCAAGAGT ACCTGGAGAA AGCTTTAAAC AAGTAAGCAC AACAGCCCAA AGGACTTTCC
  AGTAGACCCC CGAGGAAGGC TGACATCCGT GGGAGATGCA AGGGCAGTGG TGGGGAGGAG
  GGCCTGAACC CTGGCCAGGA TGGCCGGCGG GACAGCACTG ACTGGGGTCA TGCTAAGGTT
  Y
  GCCAGCATAA AGACACTCCG CCATAGCATA TGGTACGATA TTGCAGCTTA TATTCATCCC
  TGCCCTCGCC CGTGCACAAT GGAGCTTTTA TAACTGGGGT TTTTCTAAGG AATTGTATTA
  CCCTAACCAG TTAGCTTCAT CCCCATTCTC CTCATCCTCA TCTTCATTTT AAAAAGCAGT
  GATTACTTCA AGGGCTGTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12741013	L12029_AN2228_2	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C
ss12759332	L12029_JC340_1	ROCHEBIO	RPAMM	r	SNP	A	A	A				A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8236552					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117150688 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cxcl12	C-X-C motif chemokine ligand 12			Intron
				mRNA-UTR
Rr637288	regulatory region 637288			1059 bp distal
Rr637289	regulatory region 637289			139 bp proximal
Rr637290	regulatory region 637290			324 bp proximal
Rr637291	regulatory region 637291			375 bp proximal
Tssr58395	transcription start site region 58395			222 bp downstream
Tssr58396	transcription start site region 58396			208 bp downstream
Tssr58397	transcription start site region 58397			173 bp downstream
Tssr58398	transcription start site region 58398			150 bp downstream
Tssr58399	transcription start site region 58399			121 bp downstream
Tssr58400	transcription start site region 58400			88 bp downstream
Tssr58401	transcription start site region 58401			54 bp downstream
Tssr58402	transcription start site region 58402			25 bp downstream
Tssr58403	transcription start site region 58403			7 bp downstream
Tssr58404	transcription start site region 58404			within coordinates
Tssr58405	transcription start site region 58405			41 bp upstream
Tssr58406	transcription start site region 58406			71 bp upstream
Tssr58407	transcription start site region 58407			102 bp upstream
Tssr58408	transcription start site region 58408			169 bp upstream
Tssr58409	transcription start site region 58409			191 bp upstream
Tssr58410	transcription start site region 58410			213 bp upstream
Tssr58411	transcription start site region 58411			229 bp upstream
Tssr58412	transcription start site region 58412			256 bp upstream
Tssr58413	transcription start site region 58413			269 bp upstream
Tssr58414	transcription start site region 58414			302 bp upstream
Tssr58415	transcription start site region 58415			317 bp upstream
Tssr58416	transcription start site region 58416			332 bp upstream
Tssr58417	transcription start site region 58417			386 bp upstream
Tssr58418	transcription start site region 58418			419 bp upstream
Tssr58419	transcription start site region 58419			438 bp upstream
Tssr58420	transcription start site region 58420			465 bp upstream
Tssr58421	transcription start site region 58421			484 bp upstream
Tssr58422	transcription start site region 58422			510 bp upstream
Tssr58423	transcription start site region 58423			518 bp upstream
Tssr58424	transcription start site region 58424			580 bp upstream
Tssr58425	transcription start site region 58425			625 bp upstream
Tssr58426	transcription start site region 58426			647 bp upstream
Tssr58427	transcription start site region 58427			674 bp upstream
Tssr58428	transcription start site region 58428			689 bp upstream
Tssr58429	transcription start site region 58429			754 bp upstream
Tssr58430	transcription start site region 58430			799 bp upstream
Tssr58431	transcription start site region 58431			895 bp upstream
Tssr58432	transcription start site region 58432			968 bp upstream
Tssr58433	transcription start site region 58433			1004 bp upstream
Tssr58434	transcription start site region 58434			1442 bp upstream
Tssr62617	transcription start site region 62617			151 bp upstream
Tssr62618	transcription start site region 62618			128 bp upstream
Tssr62619	transcription start site region 62619			92 bp upstream
Tssr62620	transcription start site region 62620			59 bp upstream
Tssr62621	transcription start site region 62621			within coordinates
Tssr62622	transcription start site region 62622			548 bp downstream
Tssr62623	transcription start site region 62623			566 bp downstream
Tssr62624	transcription start site region 62624			681 bp downstream
Tssr62625	transcription start site region 62625			832 bp downstream
Tssr62626	transcription start site region 62626			928 bp downstream
Tssr62627	transcription start site region 62627			959 bp downstream
Tssr62628	transcription start site region 62628			1094 bp downstream
Tssr62629	transcription start site region 62629			1274 bp downstream