rs8236551 SNP Detail

Summary

• ID
  rs8236551
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:117150653 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCACGGCTG AAGAACAACA
  ACAGACAAGT GTGCATTGAC CCGAAATTAA AGTGGATCCA AGAGTACCTG GAGAAAGCTT
  TAAACAAGTA AGCACAACAG CCCAAAGGAC TTTCCAGTAG ACCCCCGAGG AAGGCTGACA
  TCCGTGGGAG ATGCAAGGGC AGTGGTGGGG AGGAGGGCCT GAACCCTGGC CAGGATGGCC
  R
  GCGGGACAGC ACTGACTGGG GTCATGCTAA GGTTTGCCAG CATAAAGACA CTCCGCCATA
  GCATATGGTA CGATATTGCA GCTTATATTC ATCCCTGCCC TCGCCCGTGC ACAATGGAGC
  TTTTATAACT GGGGTTTTTC TAAGGAATTG TATTACCCTA ACCAGTTAGC TTCATCCCCA
  TTCTCCTCAT CCTCATCTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12741012	L12029_AN2228_1	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	G		G	G	A
ss12759333	L12029_JC340_2	ROCHEBIO	RPAMM	r	SNP	C	C	C				C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8236551					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117150653 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cxcl12	C-X-C motif chemokine ligand 12			Intron
				mRNA-UTR
Rr637288	regulatory region 637288			1024 bp distal
Rr637289	regulatory region 637289			174 bp proximal
Rr637290	regulatory region 637290			359 bp proximal
Rr637291	regulatory region 637291			410 bp proximal
Tssr58395	transcription start site region 58395			187 bp downstream
Tssr58396	transcription start site region 58396			173 bp downstream
Tssr58397	transcription start site region 58397			138 bp downstream
Tssr58398	transcription start site region 58398			115 bp downstream
Tssr58399	transcription start site region 58399			86 bp downstream
Tssr58400	transcription start site region 58400			53 bp downstream
Tssr58401	transcription start site region 58401			19 bp downstream
Tssr58402	transcription start site region 58402			within coordinates
Tssr58403	transcription start site region 58403			15 bp upstream
Tssr58404	transcription start site region 58404			34 bp upstream
Tssr58405	transcription start site region 58405			76 bp upstream
Tssr58406	transcription start site region 58406			106 bp upstream
Tssr58407	transcription start site region 58407			137 bp upstream
Tssr58408	transcription start site region 58408			204 bp upstream
Tssr58409	transcription start site region 58409			226 bp upstream
Tssr58410	transcription start site region 58410			248 bp upstream
Tssr58411	transcription start site region 58411			264 bp upstream
Tssr58412	transcription start site region 58412			291 bp upstream
Tssr58413	transcription start site region 58413			304 bp upstream
Tssr58414	transcription start site region 58414			337 bp upstream
Tssr58415	transcription start site region 58415			352 bp upstream
Tssr58416	transcription start site region 58416			367 bp upstream
Tssr58417	transcription start site region 58417			421 bp upstream
Tssr58418	transcription start site region 58418			454 bp upstream
Tssr58419	transcription start site region 58419			473 bp upstream
Tssr58420	transcription start site region 58420			500 bp upstream
Tssr58421	transcription start site region 58421			519 bp upstream
Tssr58422	transcription start site region 58422			545 bp upstream
Tssr58423	transcription start site region 58423			553 bp upstream
Tssr58424	transcription start site region 58424			615 bp upstream
Tssr58425	transcription start site region 58425			660 bp upstream
Tssr58426	transcription start site region 58426			682 bp upstream
Tssr58427	transcription start site region 58427			709 bp upstream
Tssr58428	transcription start site region 58428			724 bp upstream
Tssr58429	transcription start site region 58429			789 bp upstream
Tssr58430	transcription start site region 58430			834 bp upstream
Tssr58431	transcription start site region 58431			930 bp upstream
Tssr58432	transcription start site region 58432			1003 bp upstream
Tssr58433	transcription start site region 58433			1039 bp upstream
Tssr58434	transcription start site region 58434			1477 bp upstream
Tssr62617	transcription start site region 62617			116 bp upstream
Tssr62618	transcription start site region 62618			93 bp upstream
Tssr62619	transcription start site region 62619			57 bp upstream
Tssr62620	transcription start site region 62620			24 bp upstream
Tssr62621	transcription start site region 62621			31 bp downstream
Tssr62622	transcription start site region 62622			583 bp downstream
Tssr62623	transcription start site region 62623			601 bp downstream
Tssr62624	transcription start site region 62624			716 bp downstream
Tssr62625	transcription start site region 62625			867 bp downstream
Tssr62626	transcription start site region 62626			963 bp downstream
Tssr62627	transcription start site region 62627			994 bp downstream
Tssr62628	transcription start site region 62628			1129 bp downstream
Tssr62629	transcription start site region 62629			1309 bp downstream