rs8236375 SNP Detail

Summary

• ID
  rs8236375
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:117151833 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCTA TGATCTTGAG CTACTGGCAA
  M
  TTGTAAAGAA ATATATATGA CATAT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12759346	L12029_JC346_2	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	A	C	C	C	C
ss12759347	L12029_JC347_1	ROCHEBIO	RPAMM	r	SNP	G	G	G	G	G	G	G	T	G	G	G	G	G
ss12759349	L12029_JC348_1	ROCHEBIO	RPAMM	r	SNP	G	G	G	G	G	G	G	T	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8236375					SNP	C	C	C	C	C	C	C	A	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117151833 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cxcl12	C-X-C motif chemokine ligand 12			Intron
				mRNA-UTR
Rr637289	regulatory region 637289			548 bp distal
Rr637290	regulatory region 637290			800 bp distal
Rr637291	regulatory region 637291			749 bp distal
Rr637292	regulatory region 637292			1471 bp proximal
Tssr58395	transcription start site region 58395			1367 bp downstream
Tssr58396	transcription start site region 58396			1353 bp downstream
Tssr58397	transcription start site region 58397			1318 bp downstream
Tssr58398	transcription start site region 58398			1295 bp downstream
Tssr58399	transcription start site region 58399			1266 bp downstream
Tssr58400	transcription start site region 58400			1233 bp downstream
Tssr58401	transcription start site region 58401			1199 bp downstream
Tssr58402	transcription start site region 58402			1170 bp downstream
Tssr58403	transcription start site region 58403			1152 bp downstream
Tssr58404	transcription start site region 58404			1141 bp downstream
Tssr58405	transcription start site region 58405			1085 bp downstream
Tssr58406	transcription start site region 58406			1056 bp downstream
Tssr58407	transcription start site region 58407			1034 bp downstream
Tssr58408	transcription start site region 58408			971 bp downstream
Tssr58409	transcription start site region 58409			943 bp downstream
Tssr58410	transcription start site region 58410			925 bp downstream
Tssr58411	transcription start site region 58411			894 bp downstream
Tssr58412	transcription start site region 58412			882 bp downstream
Tssr58413	transcription start site region 58413			858 bp downstream
Tssr58414	transcription start site region 58414			836 bp downstream
Tssr58415	transcription start site region 58415			818 bp downstream
Tssr58416	transcription start site region 58416			800 bp downstream
Tssr58417	transcription start site region 58417			746 bp downstream
Tssr58418	transcription start site region 58418			720 bp downstream
Tssr58419	transcription start site region 58419			700 bp downstream
Tssr58420	transcription start site region 58420			665 bp downstream
Tssr58421	transcription start site region 58421			641 bp downstream
Tssr58422	transcription start site region 58422			628 bp downstream
Tssr58423	transcription start site region 58423			607 bp downstream
Tssr58424	transcription start site region 58424			548 bp downstream
Tssr58425	transcription start site region 58425			509 bp downstream
Tssr58426	transcription start site region 58426			491 bp downstream
Tssr58427	transcription start site region 58427			457 bp downstream
Tssr58428	transcription start site region 58428			446 bp downstream
Tssr58429	transcription start site region 58429			368 bp downstream
Tssr58430	transcription start site region 58430			337 bp downstream
Tssr58431	transcription start site region 58431			238 bp downstream
Tssr58432	transcription start site region 58432			157 bp downstream
Tssr58433	transcription start site region 58433			132 bp downstream
Tssr58434	transcription start site region 58434			297 bp upstream
Tssr62617	transcription start site region 62617			1296 bp upstream
Tssr62618	transcription start site region 62618			1273 bp upstream
Tssr62619	transcription start site region 62619			1237 bp upstream
Tssr62620	transcription start site region 62620			1204 bp upstream
Tssr62621	transcription start site region 62621			1120 bp upstream
Tssr62622	transcription start site region 62622			580 bp upstream
Tssr62623	transcription start site region 62623			560 bp upstream
Tssr62624	transcription start site region 62624			414 bp upstream
Tssr62625	transcription start site region 62625			275 bp upstream
Tssr62626	transcription start site region 62626			210 bp upstream
Tssr62627	transcription start site region 62627			165 bp upstream
Tssr62628	transcription start site region 62628			33 bp upstream
Tssr62629	transcription start site region 62629			129 bp downstream