rs8236374 SNP Detail

Summary

• ID
  rs8236374
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:117151821 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCAG TAGATATCTC TATGATCTTG
  M
  GCTACTGGCA ACTTGTAAAG AAATA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12759345	L12029_JC346_1	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	C	A	A	A	A	C
ss12759348	L12029_JC347_2	ROCHEBIO	RPAMM	r	SNP	T	T	T	T	T	T	T	G	T	T	T	T	G
ss12759350	L12029_JC348_2	ROCHEBIO	RPAMM	r	SNP	T	T	T	T	T	T	T	G	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8236374					SNP	A	A	A	A	A	A	A	C	A	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117151821 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cxcl12	C-X-C motif chemokine ligand 12			Intron
				mRNA-UTR
Rr637289	regulatory region 637289			536 bp distal
Rr637290	regulatory region 637290			788 bp distal
Rr637291	regulatory region 637291			737 bp distal
Rr637292	regulatory region 637292			1483 bp proximal
Tssr58395	transcription start site region 58395			1355 bp downstream
Tssr58396	transcription start site region 58396			1341 bp downstream
Tssr58397	transcription start site region 58397			1306 bp downstream
Tssr58398	transcription start site region 58398			1283 bp downstream
Tssr58399	transcription start site region 58399			1254 bp downstream
Tssr58400	transcription start site region 58400			1221 bp downstream
Tssr58401	transcription start site region 58401			1187 bp downstream
Tssr58402	transcription start site region 58402			1158 bp downstream
Tssr58403	transcription start site region 58403			1140 bp downstream
Tssr58404	transcription start site region 58404			1129 bp downstream
Tssr58405	transcription start site region 58405			1073 bp downstream
Tssr58406	transcription start site region 58406			1044 bp downstream
Tssr58407	transcription start site region 58407			1022 bp downstream
Tssr58408	transcription start site region 58408			959 bp downstream
Tssr58409	transcription start site region 58409			931 bp downstream
Tssr58410	transcription start site region 58410			913 bp downstream
Tssr58411	transcription start site region 58411			882 bp downstream
Tssr58412	transcription start site region 58412			870 bp downstream
Tssr58413	transcription start site region 58413			846 bp downstream
Tssr58414	transcription start site region 58414			824 bp downstream
Tssr58415	transcription start site region 58415			806 bp downstream
Tssr58416	transcription start site region 58416			788 bp downstream
Tssr58417	transcription start site region 58417			734 bp downstream
Tssr58418	transcription start site region 58418			708 bp downstream
Tssr58419	transcription start site region 58419			688 bp downstream
Tssr58420	transcription start site region 58420			653 bp downstream
Tssr58421	transcription start site region 58421			629 bp downstream
Tssr58422	transcription start site region 58422			616 bp downstream
Tssr58423	transcription start site region 58423			595 bp downstream
Tssr58424	transcription start site region 58424			536 bp downstream
Tssr58425	transcription start site region 58425			497 bp downstream
Tssr58426	transcription start site region 58426			479 bp downstream
Tssr58427	transcription start site region 58427			445 bp downstream
Tssr58428	transcription start site region 58428			434 bp downstream
Tssr58429	transcription start site region 58429			356 bp downstream
Tssr58430	transcription start site region 58430			325 bp downstream
Tssr58431	transcription start site region 58431			226 bp downstream
Tssr58432	transcription start site region 58432			145 bp downstream
Tssr58433	transcription start site region 58433			120 bp downstream
Tssr58434	transcription start site region 58434			309 bp upstream
Tssr62617	transcription start site region 62617			1284 bp upstream
Tssr62618	transcription start site region 62618			1261 bp upstream
Tssr62619	transcription start site region 62619			1225 bp upstream
Tssr62620	transcription start site region 62620			1192 bp upstream
Tssr62621	transcription start site region 62621			1108 bp upstream
Tssr62622	transcription start site region 62622			568 bp upstream
Tssr62623	transcription start site region 62623			548 bp upstream
Tssr62624	transcription start site region 62624			402 bp upstream
Tssr62625	transcription start site region 62625			263 bp upstream
Tssr62626	transcription start site region 62626			198 bp upstream
Tssr62627	transcription start site region 62627			153 bp upstream
Tssr62628	transcription start site region 62628			21 bp upstream
Tssr62629	transcription start site region 62629			141 bp downstream