rs6413040 SNP Detail

Summary

• ID
  rs6413040
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:55650272 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTACACAGA CACACCGGGA
  TAAACTGGTC AATAATAAAA GACCACAGCC TCAAAACAGA AATAGCATTT AGCAGTGATG
  CCACCTAAAA AGGCAGAACA AAGTTGTCTG GAAGCTAAAC GGAAATCAAA GGTCAGTGGT
  GGGCTTCCTG GGTACTGAGT ATGTGCCGCT ATCACCTGCA CTGCCCAGAA ATGAGATACC
  R
  ACTTGGGAAG AAAATGTTAC CACATGTAAG TAATTTCAGT TGGAATCTGA GCTGCTGCAC
  TGCCATTAGG AGTGTTTCTC TCTGTAACAC AAATACTCTG TGTACAGCCT ATGTGACAAA
  CAGATGTGCA GCTTTGCTCT AGCTCTCTAA ATGCTTCCAT TAATTTAAAT GTGTAGCACT
  GGGCTGTGAA GGACAGTGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8819259	WI_WGS_12_50068713	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6413040					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:55650272 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Insm2	insulinoma-associated 2			1454 bp downstream
Ralgapa1	Ral GTPase activating protein, alpha subunit 1			mRNA-UTR
				Noncoding-Transcript-Variant