rs6413027 SNP Detail

Summary

• ID
  rs6413027
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:55650268 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAAGTACA CAGACACACC
  GGGATAAACT GGTCAATAAT AAAAGACCAC AGCCTCAAAA CAGAAATAGC ATTTAGCAGT
  GATGCCACCT AAAAAGGCAG AACAAAGTTG TCTGGAAGCT AAACGGAAAT CAAAGGTCAG
  TGGTGGGCTT CCTGGGTACT GAGTATGTGC CGCTATCACC TGCACTGCCC AGAAATGAGA
  Y
  ACCAACTTGG GAAGAAAATG TTACCACATG TAAGTAATTT CAGTTGGAAT CTGAGCTGCT
  GCACTGCCAT TAGGAGTGTT TCTCTCTGTA ACACAAATAC TCTGTGTACA GCCTATGTGA
  CAAACAGATG TGCAGCTTTG CTCTAGCTCT CTAAATGCTT CCATTAATTT AAATGTGTAG
  CACTGGGCTG TGAAGGACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8819246	WI_WGS_12_50068709	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6413027					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:55650268 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Insm2	insulinoma-associated 2			1450 bp downstream
Ralgapa1	Ral GTPase activating protein, alpha subunit 1			mRNA-UTR
				Noncoding-Transcript-Variant