rs6412674 SNP Detail

Summary

• ID
  rs6412674
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:107050422 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAGC TTACACTTAG AAAGCTCCTT
  R
  GAGGATATGC ATATCTAGAA TAGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	WSB/EiJ
ss8818893	WI_WGS_4_104916800	WI	MOUSE	f	SNP				A	G
ss38286507	NES09500808	PERLEGEN	MM_PANEL2	f	SNP			A				G	A
ss45601296	mCV24827253	ABI	CRAMUS_MOUSE	f	SNP	G	G		A		G
ss147175948	ENSMUSSNP6277675	ENSEMBL	ENSEMBL_Sanger	f	SNP		G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	WSB/EiJ
rs6412674					SNP	G	G	A	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38286507	NES09500808	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107050422 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr596946	regulatory region 596946			990 bp proximal
Tmem59	transmembrane protein 59			Intron
				Noncoding-Transcript-Variant